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| author | Arun Isaac | 2026-01-14 20:29:33 +0000 |
|---|---|---|
| committer | Arun Isaac | 2026-01-16 23:06:32 +0000 |
| commit | a76dedb432aa99f53681144c488ac19b9c23e660 (patch) | |
| tree | 17ba9a6502c0f71a4355f0b8210666b65749ea15 /doc/file-formats.md | |
| parent | 1e6efe6ef73cbb65839a95883899442f5dc4afe1 (diff) | |
| download | pyhegp-a76dedb432aa99f53681144c488ac19b9c23e660.tar.gz pyhegp-a76dedb432aa99f53681144c488ac19b9c23e660.tar.lz pyhegp-a76dedb432aa99f53681144c488ac19b9c23e660.zip | |
Add intercept column in phenotypes file.
Diffstat (limited to 'doc/file-formats.md')
| -rw-r--r-- | doc/file-formats.md | 6 |
1 files changed, 5 insertions, 1 deletions
diff --git a/doc/file-formats.md b/doc/file-formats.md index 01263e3..04fae0c 100644 --- a/doc/file-formats.md +++ b/doc/file-formats.md @@ -49,7 +49,11 @@ chr11 3464016 A -0.3461 -0.334 -0.3331 0.08 ## phenotype (and covariates) file -The phenotype file is a tab-separated values (TSV) file. The first line MUST be a header with column labels. Each row corresponds to one individual. The column labelled `sample-id` contains the sample identifier for that individual. Other columns each contain a phenotypical trait for that individual. The headers of these columns MUST be the names of the phenotypes. Column headers are case-sensitive. +The phenotype file is a tab-separated values (TSV) file. The first line MUST be a header with column labels. Each row corresponds to one individual. + +The column labelled `sample-id` contains the sample identifier for that individual. Other columns each contain a phenotypical trait for that individual. The headers of these columns MUST be the names of the phenotypes. Column headers are case-sensitive. + +Encryption MAY add a column labelled `intercept` containing the ciphertext corresponding to a vector of 1s. Here is an example phenotype file. ``` |