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| author | Arun Isaac | 2025-11-13 15:39:32 +0000 |
|---|---|---|
| committer | Arun Isaac | 2025-11-13 15:39:32 +0000 |
| commit | b51b891c26d7ceb6271692b0beb91182dbb3078e (patch) | |
| tree | f554af1ae9fb0d7ee65b4eb7b3a55e4767bb4b27 | |
| parent | cf30286cd6488d825e327442abbfc43f6f711325 (diff) | |
| download | pyhegp-b51b891c26d7ceb6271692b0beb91182dbb3078e.tar.gz pyhegp-b51b891c26d7ceb6271692b0beb91182dbb3078e.tar.lz pyhegp-b51b891c26d7ceb6271692b0beb91182dbb3078e.zip | |
Disable tests for julia-jwas.
| -rw-r--r-- | .guix/hsmice-test.scm | 12 |
1 files changed, 11 insertions, 1 deletions
diff --git a/.guix/hsmice-test.scm b/.guix/hsmice-test.scm index bb84a09..8e50160 100644 --- a/.guix/hsmice-test.scm +++ b/.guix/hsmice-test.scm @@ -18,7 +18,8 @@ (define-module (hsmice-test) #:use-module ((gn packages bioinformatics) #:select (r-genio)) - #:use-module ((gn packages julia) #:select (julia-jwas julia-pipe)) + #:use-module ((gn packages julia) #:select (julia-pipe)) + #:use-module ((gn packages julia) #:select (julia-jwas) #:prefix guix:) #:use-module ((gnu packages base) #:select (tar)) #:use-module ((gnu packages compression) #:select (gzip)) #:use-module ((gnu packages cran) #:select (r-dplyr r-purrr r-qqman r-stringr)) @@ -198,6 +199,15 @@ genome-wide association study} library for R.") (define hsmice-qtl-checked (computed-file "hsmice-qtl-checked" hsmice-qtl-checked-gexp)) +;; Our CI system does not have enough memory to run tests for +;; julia-jwas. So, we disable them. +(define julia-jwas + (package + (inherit guix:julia-jwas) + (arguments + (substitute-keyword-arguments (package-arguments guix:julia-jwas) + ((#:tests? tests? #f) #f))))) + (define hsmice-jwas-gwas-gexp (let ((gwas-script (local-file "../e2e-tests/hsmice/jwas-gwas.jl")) (jwas-manhattan-script (local-file "../e2e-tests/hsmice/jwas-manhattan.r")) |