doc/domagi-crush.dbk


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<?xml version="1.0" encoding="utf-8"?>
<refentry xmlns="http://docbook.org/ns/docbook"
          xmlns:xi="http://www.w3.org/2001/XInclude"
          xmlns:xlink="http://www.w3.org/1999/xlink">
  <xi:include href="gen-refentry-crush.xml" />
  <refsection>
    <title>Description</title>
    <para>Replace runs of Ns with single <literal>N</literal>s (for example, <literal>ANNNT</literal> becomes <literal>ANT</literal>). Similar to <link xlink:href="https://www.ncbi.nlm.nih.gov/genbank/fastaformat/">the FASTA format</link>, the symbol <literal>N</literal> is used to represent ambiguous or unknown nucleotides.</para>
    <variablelist>
      <title>Options</title>
      <xi:include href="input-db-argument.dbk" />
      <xi:include href="output-db-argument.dbk" />
      <xi:include href="threads-argument.dbk" />
      <xi:include href="help-option.dbk" />
    </variablelist>
  </refsection>
</refentry>