doc/domagi-chop.dbk


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<?xml version="1.0" encoding="utf-8"?>
<refentry xmlns="http://docbook.org/ns/docbook"
          xmlns:xi="http://www.w3.org/2001/XInclude"
          xmlns:xlink="http://www.w3.org/1999/xlink">
  <xi:include href="gen-refentry-chop.xml" />
  <refsection>
    <title>Description</title>
    <para>Divide segments into smaller pieces while preserving the graph topology.</para>
    <variablelist>
      <title>Options</title>
      <xi:include href="input-db-argument.dbk" />
      <xi:include href="output-db-argument.dbk" />
      <varlistentry>
        <term><option>-c <replaceable>N</replaceable></option></term>
        <term><option>--chop-to=<replaceable>N</replaceable></option></term>
        <listitem><para>Divide nodes that are longer than <replaceable>N</replaceable> base pairs into nodes no longer than <replaceable>N</replaceable> while preserving the graph topology.</para></listitem>
      </varlistentry>
      <xi:include href="threads-argument.dbk" />
      <xi:include href="help-option.dbk" />
    </variablelist>
  </refsection>
</refentry>