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;;; domagi --- DuckDB-powered pangenome Swiss Army knife
;;; Copyright © 2026 Arun Isaac <arunisaac@systemreboot.net>
;;;
;;; This file is part of domagi.
;;;
;;; domagi is free software: you can redistribute it and/or modify it under the
;;; terms of the GNU General Public License as published by the Free Software
;;; Foundation, either version 3 of the License, or (at your option) any later
;;; version.
;;;
;;; domagi is distributed in the hope that it will be useful, but WITHOUT ANY
;;; WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
;;; FOR A PARTICULAR PURPOSE. See the GNU General Public License for more
;;; details.
;;;
;;; You should have received a copy of the GNU General Public License along with
;;; domagi. If not, see <https://www.gnu.org/licenses/>.
(define-module (domagi-package)
#:use-module ((gnu packages check) #:select (python-pytest))
#:use-module ((gnu packages cmake) #:select (cmake))
#:use-module ((gnu packages duckdb) #:select (duckdb python-duckdb))
#:use-module ((gnu packages pkg-config) #:select (pkg-config))
#:use-module ((gnu packages python-xyz) #:select (python-click python-meson))
#:use-module (guix build-system copy)
#:use-module (guix build-system pyproject)
#:use-module (guix gexp)
#:use-module (guix git-download)
#:use-module ((guix licenses) #:prefix license:)
#:use-module (guix packages)
#:use-module (guix utils))
(define-public verstable
(package
(name "verstable")
(version "2.2.1")
(source (origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/JacksonAllan/Verstable")
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
(base32
"0lwh9kh0jl2vxcijd8606h5xvsjxxa051qaqlx82cl36nh0hkkxp"))))
(build-system copy-build-system)
(arguments
(list #:install-plan
#~'(("verstable.h" "include/verstable.h"))))
(home-page "https://github.com/JacksonAllan/Verstable")
(synopsis "Generic C hash table library")
(description "Verstable is a versatile generic hash table intended
to bring the speed and memory efficiency of state-of-the-art C++ hash
tables such as Abseil/Swiss, Boost, and Bytell to C.
Its features include:
@begin itemize
@item Type safety
@item Customizable hash, comparison, and destructor functions
@item Single header
@item C99 compatibility
@item Generic API in C11 and later
@item High speed mostly impervious to load factor
@item Only two bytes of overhead per bucket
@item Tombstone-free deletion
@end itemize")
(license license:expat)))
(define-public domagi
(package
(name "domagi")
(version "0.1.0")
(source (local-file ".."
"domagi-checkout"
#:recursive? #t
#:select? (or (git-predicate (dirname (current-source-directory)))
(const #t))))
(build-system pyproject-build-system)
(inputs
(list duckdb
python-click
python-duckdb))
(native-inputs
(list cmake
python-meson
pkg-config
python-pytest
verstable))
(home-page "https://github.com/arunisaac/domagi")
(synopsis "DuckDB-powered pangenome Swiss Army knife")
(description "domagi is a DuckDB-powered clone of odgi, the pangenome
manipulation tool.")
(license license:gpl3+)))
domagi
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