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3 daysBridge extracted subpaths. HEAD mainArun Isaac
3 daysSplit subpaths selected by extract path range into discrete fragments.Arun Isaac
When `domagi extract` is given a path range, it may select discontinuous fragments of other paths. These fragments must be output as separate paths, not erroneously merged together.
4 daysProvide type and metavar for depth --bed-input.Arun Isaac
We also fix the test to pass in a string rather than a Path.
5 daysDo not traverse graph when extracting segments in path range.Arun Isaac
5 daysTraverse symmetrically in both directions with extract.Arun Isaac
5 daysTest domagi extract on node extraction.Arun Isaac
10 daysBuild duckdb database only once in a setup fixture.Arun Isaac
10 daysAdd chop subcommand.Arun Isaac
10 daysWhen testing, canonicalize links before comparing them.Arun Isaac
2026-08-15Error out if user-specified path does not exist.Arun Isaac
2026-08-15Add domagi overlap --paths.Arun Isaac
2026-08-15When sorting a data frame by a single column, only pass in a string.Arun Isaac
2026-08-15Add domagi overlap.Arun Isaac
2026-08-14Reverse complement sequences as required in FASTA.Arun Isaac
2026-08-14Test paths --fasta.Arun Isaac
2026-07-27Initial commitArun Isaac
generated by cgit-pink 1.4.1 (git 2.36.1) at 2026-08-31 07:59:21 +0000