about summary refs log tree commit diff
AgeCommit message (Expand)Author
13 daysAdd installation instructions to README. HEAD mainArun Isaac
2026-08-28Bridge extracted subpaths.Arun Isaac
2026-08-28Split subpaths selected by extract path range into discrete fragments.Arun Isaac
2026-08-27Symlink in docbook schema from the guix shell environment.Arun Isaac
2026-08-27Add docbook dependencies to manifest.Arun Isaac
2026-08-27Detach output database after extract.Arun Isaac
2026-08-27Order path_segment by the output coordinates, not the input.Arun Isaac
2026-08-27End meson.build with a newline.Arun Isaac
2026-08-27Move extract --context-steps option close to --node.Arun Isaac
2026-08-27Refactor extract --path-range query into extract-path-range.sql.Arun Isaac
2026-08-27Comment on extract-node-traversal.sql.Arun Isaac
2026-08-27Remove leading whitespace.Arun Isaac
2026-08-27Provide type and metavar for depth --bed-input.Arun Isaac
2026-08-26Provide path range format in usage string.Arun Isaac
2026-08-26Indicate that there is no graph traversal with --path-range.Arun Isaac
2026-08-26Re-order AND clauses for readability.Arun Isaac
2026-08-26Append extracted path range to path name.Arun Isaac
2026-08-26Re-order extracted path_segment table for optimal access.Arun Isaac
2026-08-26Install extract-node-traversal.sql.Arun Isaac
2026-08-26Do not traverse graph when extracting segments in path range.Arun Isaac
2026-08-26Allow grouping options into separate lists in refentries.Arun Isaac
2026-08-26Move node traversal extraction query to its own file.Arun Isaac
2026-08-26Traverse symmetrically in both directions with extract.Arun Isaac
2026-08-26Test domagi extract on node extraction.Arun Isaac
2026-08-25Only require documentation of non-hidden options.Arun Isaac
2026-08-25Do not hide -S, --summarize flags.Arun Isaac
2026-08-25Remove threads variable name.Arun Isaac
2026-08-25Add -P, --progress flags.Arun Isaac
2026-08-21Expose domagi script visible with pre-inst-env.Arun Isaac
2026-08-21Build duckdb database only once in a setup fixture.Arun Isaac
2026-08-21Symlink guix.scm to domagi-package.scm.Arun Isaac
2026-08-21Update odgi to 0.9.4.Arun Isaac
2026-08-21Initialize schema in crush subcommand.Arun Isaac
2026-08-21Add chop subcommand.Arun Isaac
2026-08-21When testing, canonicalize links before comparing them.Arun Isaac
2026-08-21Canonicalize L line when building database.Arun Isaac
2026-08-15Error out if user-specified path does not exist.Arun Isaac
2026-08-15Add CI badges to README.Arun Isaac
2026-08-15Add domagi overlap --paths.Arun Isaac
2026-08-15Document website building instructions.Arun Isaac
2026-08-15When sorting a data frame by a single column, only pass in a string.Arun Isaac
2026-08-15Add domagi overlap.Arun Isaac
2026-08-14Move path_length to schema as view.Arun Isaac
2026-08-14Remove TODO note about synopses.Arun Isaac
2026-08-14Reverse complement sequences as required in FASTA.Arun Isaac
2026-08-14Fix paths --fasta SQL query.Arun Isaac
2026-08-14Test paths --fasta.Arun Isaac
2026-08-14Add manual to website.Arun Isaac
2026-08-13Add manual.Arun Isaac
2026-08-13Add website.Arun Isaac
generated by cgit-pink 1.4.1 (git 2.36.1) at 2026-09-20 12:56:27 +0000