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DuckDB-powered pangenome Swiss Army knife
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Author
30 hours
Add paper workflow.
HEAD
paper-2026-workflow
main
Arun Isaac
45 hours
Add domagi project version.
Arun Isaac
45 hours
Add duckdb fallback discovery.
Arun Isaac
46 hours
Add verstable meson wrap dependency.
Arun Isaac
47 hours
Use verstable from Guix upstream.
Arun Isaac
47 hours
Document database schema in the manual.
Arun Isaac
2 days
Add license information to README.
Arun Isaac
2 days
Add Contributing section to README.
Arun Isaac
5 days
Link to the manual from the README.
Arun Isaac
2026-09-07
Add installation instructions to README.
Arun Isaac
2026-08-28
Bridge extracted subpaths.
Arun Isaac
2026-08-28
Split subpaths selected by extract path range into discrete fragments.
Arun Isaac
2026-08-27
Symlink in docbook schema from the guix shell environment.
Arun Isaac
2026-08-27
Add docbook dependencies to manifest.
Arun Isaac
2026-08-27
Detach output database after extract.
Arun Isaac
2026-08-27
Order path_segment by the output coordinates, not the input.
Arun Isaac
2026-08-27
End meson.build with a newline.
Arun Isaac
2026-08-27
Move extract --context-steps option close to --node.
Arun Isaac
2026-08-27
Refactor extract --path-range query into extract-path-range.sql.
Arun Isaac
2026-08-27
Comment on extract-node-traversal.sql.
Arun Isaac
2026-08-27
Remove leading whitespace.
Arun Isaac
2026-08-27
Provide type and metavar for depth --bed-input.
Arun Isaac
2026-08-26
Provide path range format in usage string.
Arun Isaac
2026-08-26
Indicate that there is no graph traversal with --path-range.
Arun Isaac
2026-08-26
Re-order AND clauses for readability.
Arun Isaac
2026-08-26
Append extracted path range to path name.
Arun Isaac
2026-08-26
Re-order extracted path_segment table for optimal access.
Arun Isaac
2026-08-26
Install extract-node-traversal.sql.
Arun Isaac
2026-08-26
Do not traverse graph when extracting segments in path range.
Arun Isaac
2026-08-26
Allow grouping options into separate lists in refentries.
Arun Isaac
2026-08-26
Move node traversal extraction query to its own file.
Arun Isaac
2026-08-26
Traverse symmetrically in both directions with extract.
Arun Isaac
2026-08-26
Test domagi extract on node extraction.
Arun Isaac
2026-08-25
Only require documentation of non-hidden options.
Arun Isaac
2026-08-25
Do not hide -S, --summarize flags.
Arun Isaac
2026-08-25
Remove threads variable name.
Arun Isaac
2026-08-25
Add -P, --progress flags.
Arun Isaac
2026-08-21
Expose domagi script visible with pre-inst-env.
Arun Isaac
2026-08-21
Build duckdb database only once in a setup fixture.
Arun Isaac
2026-08-21
Symlink guix.scm to domagi-package.scm.
Arun Isaac
2026-08-21
Update odgi to 0.9.4.
Arun Isaac
2026-08-21
Initialize schema in crush subcommand.
Arun Isaac
2026-08-21
Add chop subcommand.
Arun Isaac
2026-08-21
When testing, canonicalize links before comparing them.
Arun Isaac
2026-08-21
Canonicalize L line when building database.
Arun Isaac
2026-08-15
Error out if user-specified path does not exist.
Arun Isaac
2026-08-15
Add CI badges to README.
Arun Isaac
2026-08-15
Add domagi overlap --paths.
Arun Isaac
2026-08-15
Document website building instructions.
Arun Isaac
2026-08-15
When sorting a data frame by a single column, only pass in a string.
Arun Isaac
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