diff options
Diffstat (limited to 'tests/test_domagi.py')
| -rw-r--r-- | tests/test_domagi.py | 17 |
1 files changed, 17 insertions, 0 deletions
diff --git a/tests/test_domagi.py b/tests/test_domagi.py index 757d1ec..3f63550 100644 --- a/tests/test_domagi.py +++ b/tests/test_domagi.py @@ -316,3 +316,20 @@ def test_domagi_view(tmp_path, test_data_file): assert result.exit_code == 0 with open(test_data_file) as expected: assert_gfa_equal(expected, io.StringIO(result.stdout)) + +def test_error_on_missing_paths(tmp_path): + test_data_file = Path("test-data/test1.gfa") + duckdb_path = tmp_path / f"{test_data_file.stem}.db" + runner = CliRunner() + result = runner.invoke(main, ["build", + "--gfa", test_data_file, + "--out", duckdb_path]) + assert result.exit_code == 0 + result = runner.invoke(main, ["depth", + "--db", duckdb_path, + "--path", "xx"]) + assert result.exit_code == 1 and result.output == "Paths ['xx'] not found\n" + result = runner.invoke(main, ["overlap", + "--db", duckdb_path, + "--path", "xx"]) + assert result.exit_code == 1 and result.output == "Paths ['xx'] not found\n" |