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Diffstat (limited to 'tests/test_domagi.py')
| -rw-r--r-- | tests/test_domagi.py | 22 |
1 files changed, 22 insertions, 0 deletions
diff --git a/tests/test_domagi.py b/tests/test_domagi.py index 73897cf..4af8c37 100644 --- a/tests/test_domagi.py +++ b/tests/test_domagi.py @@ -207,6 +207,28 @@ def test_domagi_paths(tmp_path, test_data_file, expected_output): header=None), check_dtype=False) +@pytest.mark.xfail +@pytest.mark.parametrize("test_data_file, expected_output", + [(Path("test-data/test1.gfa"), + Path("test-data/expected-output/test1.fa")), + (Path("test-data/test2.gfa"), + Path("test-data/expected-output/test2.fa")), + (Path("test-data/test3.gfa"), + Path("test-data/expected-output/test3.fa"))]) +def test_domagi_paths_fasta(tmp_path, test_data_file, expected_output): + duckdb_path = tmp_path / f"{test_data_file.stem}.db" + runner = CliRunner() + result = runner.invoke(main, ["build", + "--gfa", test_data_file, + "--out", duckdb_path]) + assert result.exit_code == 0 + result = runner.invoke(main, ["paths", + "--fasta", + "--db", duckdb_path]) + assert result.exit_code == 0 + with open(expected_output) as file: + assert result.stdout == file.read() + @pytest.mark.parametrize("test_data_file, expected_output", [(Path("test-data/test1.gfa"), Path("test-data/expected-output/test1-stats")), |