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| author | Arun Isaac | 2026-08-18 14:44:46 +0100 |
|---|---|---|
| committer | Arun Isaac | 2026-08-21 04:03:20 +0100 |
| commit | d2282f6b7453a023af92424309e8713f5c8f7ca7 (patch) | |
| tree | 457d50052cb9dcab893fcec0a28700f73a259108 /test-data/expected-output | |
| parent | 5d65c47b0388b3e3fa50b8ddfbda4f417af4735f (diff) | |
| download | domagi-d2282f6b7453a023af92424309e8713f5c8f7ca7.tar.gz domagi-d2282f6b7453a023af92424309e8713f5c8f7ca7.tar.lz domagi-d2282f6b7453a023af92424309e8713f5c8f7ca7.zip | |
Add chop subcommand.
Diffstat (limited to 'test-data/expected-output')
| -rw-r--r-- | test-data/expected-output/test3-chop-1.gfa | 33 | ||||
| -rw-r--r-- | test-data/expected-output/test3-chop-2.gfa | 21 | ||||
| -rw-r--r-- | test-data/expected-output/test3-chop-3.gfa | 19 | ||||
| -rw-r--r-- | test-data/expected-output/test3-chop-4.gfa | 15 |
4 files changed, 88 insertions, 0 deletions
diff --git a/test-data/expected-output/test3-chop-1.gfa b/test-data/expected-output/test3-chop-1.gfa new file mode 100644 index 0000000..fa89dce --- /dev/null +++ b/test-data/expected-output/test3-chop-1.gfa @@ -0,0 +1,33 @@ +H VN:Z:1.0 +S 1 A +L 1 + 2 + 0M +S 2 G +L 2 + 3 + 0M +S 3 G +L 3 + 4 + 0M +S 4 A +L 4 + 5 + 0M +L 4 + 6 + 0M +S 5 A +L 5 + 8 + 0M +S 6 T +L 6 + 7 + 0M +L 6 - 8 + 0M +S 7 C +L 7 + 4 - 0M +L 7 + 8 + 0M +S 8 T +L 8 + 9 + 0M +S 9 C +L 9 + 10 + 0M +S 10 T +L 10 + 11 + 0M +S 11 C +L 11 + 12 + 0M +S 12 A +L 12 + 13 + 0M +S 13 G +L 13 + 14 + 0M +S 14 G +P 5+ 1+,2+,3+,4+,6+,7+,8+,9+,10+,11+,12+,13+,14+,8+,9+,10+,11+,12+,13+,14+ * +P 5- 1+,2+,3+,4+,7-,6-,8+,9+,10+,11+,12+,13+,14+ * diff --git a/test-data/expected-output/test3-chop-2.gfa b/test-data/expected-output/test3-chop-2.gfa new file mode 100644 index 0000000..bdc77d3 --- /dev/null +++ b/test-data/expected-output/test3-chop-2.gfa @@ -0,0 +1,21 @@ +H VN:Z:1.0 +S 1 AG +L 1 + 2 + 0M +S 2 GA +L 2 + 3 + 0M +L 2 + 4 + 0M +L 2 + 4 - 0M +S 3 A +L 3 + 5 + 0M +S 4 TC +L 4 - 5 + 0M +L 4 + 5 + 0M +S 5 TC +L 5 + 6 + 0M +S 6 TC +L 6 + 7 + 0M +S 7 AG +L 7 + 8 + 0M +S 8 G +P 5+ 1+,2+,4+,5+,6+,7+,8+,5+,6+,7+,8+ * +P 5- 1+,2+,4-,5+,6+,7+,8+ * diff --git a/test-data/expected-output/test3-chop-3.gfa b/test-data/expected-output/test3-chop-3.gfa new file mode 100644 index 0000000..0e16301 --- /dev/null +++ b/test-data/expected-output/test3-chop-3.gfa @@ -0,0 +1,19 @@ +H VN:Z:1.0 +S 1 AGG +L 1 + 2 + 0M +S 2 A +L 2 + 3 + 0M +L 2 + 4 + 0M +L 2 + 4 - 0M +S 3 A +L 3 + 5 + 0M +S 4 TC +L 4 - 5 + 0M +L 4 + 5 + 0M +S 5 TCT +L 5 + 6 + 0M +S 6 CAG +L 6 + 7 + 0M +S 7 G +P 5+ 1+,2+,4+,5+,6+,7+,5+,6+,7+ * +P 5- 1+,2+,4-,5+,6+,7+ * diff --git a/test-data/expected-output/test3-chop-4.gfa b/test-data/expected-output/test3-chop-4.gfa new file mode 100644 index 0000000..f043b82 --- /dev/null +++ b/test-data/expected-output/test3-chop-4.gfa @@ -0,0 +1,15 @@ +H VN:Z:1.0 +S 1 AGGA +L 1 + 2 + 0M +L 1 + 3 + 0M +L 1 + 3 - 0M +S 2 A +L 2 + 4 + 0M +S 3 TC +L 3 - 4 + 0M +L 3 + 4 + 0M +S 4 TCTC +L 4 + 5 + 0M +S 5 AGG +P 5+ 1+,3+,4+,5+,4+,5+ * +P 5- 1+,3-,4+,5+ * |