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| author | Arun Isaac | 2026-08-13 22:13:01 +0100 |
|---|---|---|
| committer | Arun Isaac | 2026-08-13 22:13:01 +0100 |
| commit | 439ada732261b76816dddc236ee41cca651a0c14 (patch) | |
| tree | fefe0f4259927008817d1a66e01bba11ff758e87 /doc/domagi-paths.dbk | |
| parent | 350ddbf6fc2acbc2b27aa7a4fbc8de491c95fa68 (diff) | |
| download | domagi-439ada732261b76816dddc236ee41cca651a0c14.tar.gz domagi-439ada732261b76816dddc236ee41cca651a0c14.tar.lz domagi-439ada732261b76816dddc236ee41cca651a0c14.zip | |
Add manual.
Diffstat (limited to 'doc/domagi-paths.dbk')
| -rw-r--r-- | doc/domagi-paths.dbk | 25 |
1 files changed, 25 insertions, 0 deletions
diff --git a/doc/domagi-paths.dbk b/doc/domagi-paths.dbk new file mode 100644 index 0000000..ed83ee7 --- /dev/null +++ b/doc/domagi-paths.dbk @@ -0,0 +1,25 @@ +<?xml version="1.0" encoding="utf-8"?> +<refentry xmlns="http://docbook.org/ns/docbook" + xmlns:xi="http://www.w3.org/2001/XInclude"> + <xi:include href="gen-refentry-paths.xml" /> + <refsection> + <title>Description</title> + <para>Interrogate paths in the pangenome. Nothing is output unless one of the relevant options are specified.</para> + <variablelist> + <title>Options</title> + <xi:include href="input-db-argument.dbk" /> + <varlistentry> + <term><option>-L</option></term> + <term><option>--list-paths</option></term> + <listitem><para>Print the names of paths in the pangenome, one per line.</para></listitem> + </varlistentry> + <varlistentry> + <term><option>-f</option></term> + <term><option>--fasta</option></term> + <listitem><para>Print paths in FASTA format.</para></listitem> + </varlistentry> + <xi:include href="threads-argument.dbk" /> + <xi:include href="help-option.dbk" /> + </variablelist> + </refsection> +</refentry> |