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;;; ccwl --- Concise Common Workflow Language
;;; Copyright © 2021 Arun Isaac <arunisaac@systemreboot.net>
;;;
;;; This file is part of ccwl.
;;;
;;; ccwl is free software: you can redistribute it and/or modify it
;;; under the terms of the GNU General Public License as published by
;;; the Free Software Foundation, either version 3 of the License, or
;;; (at your option) any later version.
;;;
;;; ccwl is distributed in the hope that it will be useful, but
;;; WITHOUT ANY WARRANTY; without even the implied warranty of
;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
;;; General Public License for more details.
;;;
;;; You should have received a copy of the GNU General Public License
;;; along with ccwl. If not, see <https://www.gnu.org/licenses/>.
(use-modules (srfi srfi-64)
(ccwl ccwl))
(test-begin "ccwl")
(test-assert "stdin input should not have inputBinding"
(not (assoc-ref
(assoc-ref
(assoc-ref
((module-ref (resolve-module '(ccwl cwl))
'command->cwl-scm)
(command #:inputs (file #:type File)
#:run "wc" "-c"
#:stdin file))
'inputs)
'file)
'inputBinding)))
(test-equal "read all forms of inputs and outputs from a CWL workflow"
'(((spam string))
((ham stdout)
(eggs stdout)))
(let ((cwl-workflow (cwl-workflow "tests/input-output-parameters.cwl")))
(list (map (lambda (input)
(list (input-id input)
(input-type input)))
(cwl-workflow-inputs cwl-workflow))
(map (lambda (output)
(list (output-id output)
(output-type output)))
(cwl-workflow-outputs cwl-workflow)))))
(test-end "ccwl")
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