aboutsummaryrefslogtreecommitdiff
path: root/tests/ccwl.scm
blob: 5d8a17ffd64e737df3961466dca62205a4567ba0 (plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
;;; ccwl --- Concise Common Workflow Language
;;; Copyright © 2021 Arun Isaac <arunisaac@systemreboot.net>
;;;
;;; This file is part of ccwl.
;;;
;;; ccwl is free software: you can redistribute it and/or modify it
;;; under the terms of the GNU General Public License as published by
;;; the Free Software Foundation, either version 3 of the License, or
;;; (at your option) any later version.
;;;
;;; ccwl is distributed in the hope that it will be useful, but
;;; WITHOUT ANY WARRANTY; without even the implied warranty of
;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
;;; General Public License for more details.
;;;
;;; You should have received a copy of the GNU General Public License
;;; along with ccwl.  If not, see <https://www.gnu.org/licenses/>.

(use-modules (srfi srfi-64)
             (ccwl ccwl))

(test-begin "ccwl")

(test-assert "stdin input should not have inputBinding"
  (not (assoc-ref
        (assoc-ref
         (assoc-ref
          ((module-ref (resolve-module '(ccwl cwl))
                       'command->cwl-scm)
           (command #:inputs (file #:type File)
                    #:run "wc" "-c"
                    #:stdin file))
          'inputs)
         'file)
        'inputBinding)))

(test-equal "read all forms of inputs and outputs from a CWL workflow"
  '(((spam string))
    ((ham stdout)
     (eggs stdout)))
  (let ((cwl-workflow (cwl-workflow "tests/input-output-parameters.cwl")))
    (list (map (lambda (input)
                 (list (input-id input)
                       (input-type input)))
               (cwl-workflow-inputs cwl-workflow))
          (map (lambda (output)
                 (list (output-id output)
                       (output-type output)))
               (cwl-workflow-outputs cwl-workflow)))))

(test-end "ccwl")