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;;; ccwl --- Concise Common Workflow Language
;;; Copyright © 2021 Arun Isaac <arunisaac@systemreboot.net>
;;;
;;; This file is part of ccwl.
;;;
;;; ccwl is free software: you can redistribute it and/or modify it
;;; under the terms of the GNU General Public License as published by
;;; the Free Software Foundation, either version 3 of the License, or
;;; (at your option) any later version.
;;;
;;; ccwl is distributed in the hope that it will be useful, but
;;; WITHOUT ANY WARRANTY; without even the implied warranty of
;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
;;; General Public License for more details.
;;;
;;; You should have received a copy of the GNU General Public License
;;; along with ccwl. If not, see <https://www.gnu.org/licenses/>.
;;; Commentary:
;; This script packages ccwl for GNU Guix.
;;
;; Run the following command to enter a development environment for
;; ccwl:
;;
;; $ guix environment -l guix.scm
;;; Code:
(use-modules (gnu packages autotools)
(gnu packages bioinformatics)
(gnu packages graphviz)
(gnu packages guile)
((gnu packages guile-xyz) #:prefix guix:)
(gnu packages pkg-config)
(gnu packages skribilo)
(gnu packages texinfo)
(guix build-system gnu)
(guix gexp)
(guix git-download)
(guix packages)
((guix licenses) #:prefix license:)
(guix utils))
(define %source-dir (dirname (current-filename)))
;; The upstream Guix guile-libyaml package is broken. Fix it
;; temporarily here.
(define guile-libyaml
(package
(inherit guix:guile-libyaml)
(arguments
(substitute-keyword-arguments (package-arguments guix:guile-libyaml)
((#:phases phases)
`(modify-phases ,phases
(replace 'remove-unused-files
(lambda _
(for-each delete-file
(list "guix.scm" "demo1.scm" "demo1.yml"))))
(replace 'build-ffi
(lambda* (#:key inputs #:allow-other-keys)
(substitute* "yaml/libyaml.scm"
(("dynamic-link \"libyaml\"")
(string-append "dynamic-link \""
(assoc-ref inputs "libyaml")
"/lib/libyaml\"")))))))))))
(define ccwl
(package
(name "ccwl")
(version "0.1.0")
(source (local-file %source-dir
#:recursive? #t
#:select? (git-predicate %source-dir)))
(build-system gnu-build-system)
(arguments
'(#:make-flags '("GUILE_AUTO_COMPILE=0"))) ; to prevent guild warnings
(inputs
`(("guile" ,guile-3.0)
("guile-libyaml" ,guile-libyaml)))
(native-inputs
`(("autoconf" ,autoconf)
("automake" ,automake)
("pkg-config" ,pkg-config)
;; To build documentation
("cwltool" ,cwltool)
("graphviz" ,graphviz)
("skribilo" ,skribilo)))
(home-page "https://git.systemreboot.net/ccwl")
(synopsis "Concise common workflow language")
(description "Concise common workflow language")
(license license:gpl3+)))
ccwl
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