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author | Arun Isaac | 2021-10-11 14:40:42 +0530 |
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committer | Arun Isaac | 2021-10-11 14:51:22 +0530 |
commit | 9a354d0b99da83f60ab68f0151d6f0d5488b7a93 (patch) | |
tree | ac2f78e964c2690f8924446dbd0c487b66df4ddb /doc/pass-stdin.scm | |
parent | b741170945ed35552524f809e1fe51a09e6f6b75 (diff) | |
download | ccwl-9a354d0b99da83f60ab68f0151d6f0d5488b7a93.tar.gz ccwl-9a354d0b99da83f60ab68f0151d6f0d5488b7a93.tar.lz ccwl-9a354d0b99da83f60ab68f0151d6f0d5488b7a93.zip |
ccwl: Factorize out CWL generation code to separate file.
This factorization is required to support other compilation targets
such as graphviz, bash, scheme, etc.
* ccwl/cwl.scm: New file.
* Makefile.am (SOURCES): Register it.
* ccwl/ccwl.scm (ccwl): Export command?, command-inputs,
command-outputs, command-args, command-stdin, command-other,
workflow?, workflow-steps, workflow-inputs, workflow-outputs,
workflow-other, input?, input-id, input-type, input-label,
input-default, input-position, input-prefix, input-other, output?,
output-id, output-type, output-binding, output-source, output-other,
step?, step-id, step-run, step-in, step-out, unspecified-default?.
(<workflow>): New type.
(filter-alist): Move to cwl.scm.
(make-workflow): Refactor into workflow->cwl-scm in cwl.scm.
(output->cwl): Move to cwl.scm as output->cwl-scm.
(command->cwl): Move to cwl.scm as command->cwl-scm.
(workflow-steps): Rename to collect-steps. Clarify docstring.
(workflow): Use collect-steps instead of workflow-steps. Explicitly
pass empty list as other argument of make-workflow. Add TODO note to
implement it properly.
* scripts/ccwl.in: Import (ccwl cwl) instead of (ccwl yaml). Use
workflow->cwl instead of scm->yaml.
* tests/ccwl.scm ("stdin input should not have inputBinding"): Use
command->cwl-scm from (ccwl cwl) instead of command->cwl from (ccwl
ccwl).
Diffstat (limited to 'doc/pass-stdin.scm')
0 files changed, 0 insertions, 0 deletions