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| author | Arun Isaac | 2021-11-02 01:17:41 +0530 |
|---|---|---|
| committer | Arun Isaac | 2021-11-02 01:31:56 +0530 |
| commit | 0b359cf2c32cde81b4311d55273c8f6c14ca6b93 (patch) | |
| tree | 50def438dc8033db14804f33a2aef7fcffa2d9ec /ccwl/cwl.scm | |
| parent | 179925c5d88ae38bc28baf470d350461d49ebede (diff) | |
| download | ccwl-0b359cf2c32cde81b4311d55273c8f6c14ca6b93.tar.gz ccwl-0b359cf2c32cde81b4311d55273c8f6c14ca6b93.tar.lz ccwl-0b359cf2c32cde81b4311d55273c8f6c14ca6b93.zip | |
ccwl: Support external CWL workflows.
* ccwl/ccwl.scm: Import (yaml). Export cwl-workflow?, cwl-workflow,
cwl-workflow-file, cwl-workflow-inputs and cwl-workflow-outputs.
(<cwl-workflow>): New type.
(cwl-workflow, function-input-keys, function-outputs,
function-object): New functions.
(command-input-keys, command-object): Delete functions.
(collect-steps): Replace command-object with function-object,
command-input-keys with function-input-keys and command-outputs with
function-outputs.
* ccwl/cwl.scm (workflow->cwl-scm): Handle <cwl-workflow> objects.
* tests/ccwl.scm ("read all forms of inputs and outputs from a CWL
workflow"): New test.
* guix.scm: Import (gnu packages guile-xyz) and (guix utils).
(guile-libyaml): New variable.
(ccwl)[inputs]: Add guile-libyaml.
Diffstat (limited to 'ccwl/cwl.scm')
| -rw-r--r-- | ccwl/cwl.scm | 2 |
1 files changed, 2 insertions, 0 deletions
diff --git a/ccwl/cwl.scm b/ccwl/cwl.scm index 47b30da..e4d03bc 100644 --- a/ccwl/cwl.scm +++ b/ccwl/cwl.scm @@ -86,6 +86,8 @@ association list." (run . ,(match (step-run step) ((? command? command) (command->cwl-scm command)) + ((? cwl-workflow? cwl-workflow) + (cwl-workflow-file cwl-workflow)) (tree tree))))) (workflow-steps workflow))))) |