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cwlVersion: v1.1
class: CommandLineTool
hints:
ResourceRequirement:
coresMin: 1
ramMin: 3000
inputs:
reversed_sorting:
type: string
inputBinding: {position: 3}
readsFA:
type: File
inputBinding: {position: 2}
script:
type: File
inputBinding: {position: 1}
default: {class: File, location: sort_fasta_by_quality_and_len.py}
stdout: $(inputs.readsFA.nameroot).sorted_by_quality_and_len.fasta
outputs:
sortedReadsFA:
type: stdout
dups:
type: File
outputBinding: {glob: dups.txt}
requirements:
InlineJavascriptRequirement: {}
ShellCommandRequirement: {}
baseCommand: [python]
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