aboutsummaryrefslogtreecommitdiff
path: root/workflows/pangenome-generate/arvados-and-samtools-dockerfile/Dockerfile
blob: 6f857acd3764db4d0a0e8d38049166ea2f7f523f (plain)
1
2
3
4
5
6
7
8
9
10
FROM debian:10
ENV DEBIAN_FRONTEND noninteractive
RUN apt-get update -q
RUN apt-get install -yq --no-install-recommends gnupg
ADD 1078ECD7.key /tmp/
RUN cat /tmp/1078ECD7.key | apt-key add -
RUN echo 'deb http://apt.arvados.org/ buster main' > /etc/apt/sources.list.d/apt.arvados.org-stable.list
RUN apt-get update -q && apt-get install -yq --no-install-recommends samtools python3-python-client
RUN rm -f /usr/bin/python && ln -s /usr/share/python3/dist/python3-python-client/bin/python /usr/bin/python
RUN rm -f /usr/bin/python3 && ln -s /usr/share/python3/dist/python3-python-client/bin/python /usr/bin/python3