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path: root/scripts/uthsc_samples/template.yaml
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id: placeholder

license:
    license_type: https://creativecommons.org/licenses/by/4.0/
    title: "$strain"
    attribution_name: "Mariah Taylor, Colleen B. Jonsson"
    attribution_url: https://www.uthsc.edu/medicine/molecular-sciences/faculty-directory/jonsson.php

host:
    host_id: "$sample_id"
    host_species: http://purl.obolibrary.org/obo/NCBITaxon_9606

sample:
    sample_id: "$sample_id"
    specimen_source: [http://purl.obolibrary.org/obo/NCIT_C155831]
    collection_date: "$collection_date"
    collection_location: $location

virus:
    virus_species: http://purl.obolibrary.org/obo/NCBITaxon_2697049
    virus_strain: "$strain"

technology:
    sample_sequencing_technology: [http://www.ebi.ac.uk/efo/EFO_0008632]
    alignment_protocol: https://bio.tools/BWA#!
    additional_technology_information: "Oxford Nanopore MiniIon RNA long reads"

submitter:
    authors: [Mariah Taylor, Colleen B. Jonsson]
    submitter_name: [Mariah Taylor, Colleen B. Jonsson, Pjotr Prins]
    submitter_address: UTHSC, Memphis, Tennessee 38163, USA
    originating_lab: Regional Biocontainment Laboratory, Memphis, TN
    provider_sample_id: $sample_id
    submitter_sample_id: $sample_id
    submitter_orcid: [https://orcid.org/0000-0002-2640-7672,https://orcid.org/0000-0002-8021-9162]