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# Contains suggested human-readable field values and their corresponding IRIs.
# Keyed on the field names in the types in the schema. Relies on field names
# being unique or at least using the same options in different containing
# types.
host_age_unit:
Years: http://purl.obolibrary.org/obo/UO_0000036
Months: http://purl.obolibrary.org/obo/UO_0000035
Weeks: http://purl.obolibrary.org/obo/UO_0000034
Days: http://purl.obolibrary.org/obo/UO_0000033
Hours: http://purl.obolibrary.org/obo/UO_0000032
host_sex:
Male: http://purl.obolibrary.org/obo/PATO_0000384
Female: http://purl.obolibrary.org/obo/PATO_0000383
Intersex: http://purl.obolibrary.org/obo/PATO_0001340
host_health_status:
healthy: http://purl.obolibrary.org/obo/NCIT_C115935
asymptomatic: http://purl.obolibrary.org/obo/NCIT_C3833
symptomatic: http://purl.obolibrary.org/obo/NCIT_C25269
admitted to hospital: http://purl.obolibrary.org/obo/GENEPIO_0002020
discharged from hospital: http://purl.obolibrary.org/obo/GENEPIO_0001849
dead: http://purl.obolibrary.org/obo/NCIT_C28554
alive: http://purl.obolibrary.org/obo/NCIT_C37987
sample_sequencing_technology:
Illumina NextSeq 500: http://www.ebi.ac.uk/efo/EFO_0009173
Illumina NextSeq 550: http://www.ebi.ac.uk/efo/EFO_0008566
Illumina HiSeq X: http://www.ebi.ac.uk/efo/EFO_0008567
Illumina MiSeq: http://www.ebi.ac.uk/efo/EFO_0004205
Illumina: http://purl.obolibrary.org/obo/OBI_0000759
IonTorrent: http://purl.obolibrary.org/obo/NCIT_C125894
Oxford Nanopore MinION: http://www.ebi.ac.uk/efo/EFO_0008632
Oxford Nanopore Sequencing: http://purl.obolibrary.org/obo/NCIT_C146818
Sanger dideoxy sequencing: http://purl.obolibrary.org/obo/NCIT_C19641
sample_sequencing_technology2:
Illumina NextSeq 500: http://www.ebi.ac.uk/efo/EFO_0009173
Illumina NextSeq 550: http://www.ebi.ac.uk/efo/EFO_0008566
Illumina HiSeq X: http://www.ebi.ac.uk/efo/EFO_0008567
Illumina MiSeq: http://www.ebi.ac.uk/efo/EFO_0004205
Illumina: http://purl.obolibrary.org/obo/OBI_0000759
IonTorrent: http://purl.obolibrary.org/obo/NCIT_C125894
Ion Semiconductor Sequencing: http://purl.obolibraryorg/obo/NCIT_C125894
Oxford Nanopore MinION: http://www.ebi.ac.uk/efo/EFO_0008632
Oxford Nanopore Sequencing: http://purl.obolibrary.org/obo/NCIT_C146818
Sanger dideoxy sequencing: http://purl.obolibrary.org/obo/NCIT_C19641
sample_sequencing_technology3:
Illumina NextSeq 500: http://www.ebi.ac.uk/efo/EFO_0009173
Illumina NextSeq 550: http://www.ebi.ac.uk/efo/EFO_0008566
Illumina HiSeq X: http://www.ebi.ac.uk/efo/EFO_0008567
Illumina MiSeq: http://www.ebi.ac.uk/efo/EFO_0004205
Illumina: http://purl.obolibrary.org/obo/OBI_0000759
IonTorrent: http://purl.obolibrary.org/obo/NCIT_C125894
Ion Semiconductor Sequencing: http://purl.obolibraryorg/obo/NCIT_C125894
Oxford Nanopore MinION: http://www.ebi.ac.uk/efo/EFO_0008632
Oxford Nanopore Sequencing: http://purl.obolibrary.org/obo/NCIT_C146818
Sanger dideoxy sequencing: http://purl.obolibrary.org/obo/NCIT_C19641
specimen_source:
nasopharyngeal swab: http://purl.obolibrary.org/obo/NCIT_C155831
oropharyngeal swab: http://purl.obolibrary.org/obo/NCIT_C155835
sputum: http://purl.obolibrary.org/obo/NCIT_C13278
bronchoalveolar lavage fluid: http://purl.obolibrary.org/obo/NCIT_C13195
specimen_source2:
nasopharyngeal swab: http://purl.obolibrary.org/obo/NCIT_C155831
oropharyngeal swab: http://purl.obolibrary.org/obo/NCIT_C155835
sputum: http://purl.obolibrary.org/obo/NCIT_C13278
bronchoalveolar lavage fluid: http://purl.obolibrary.org/obo/NCIT_C13195
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