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# Sequence uploader
This repository provides a sequence uploader for the
# Run
Run the uploader with a FASTA file and accompanying metadata:
python3 bh20sequploader/main.py example/sequence.fasta example/metadata.json
# Installation
This tool requires the arvados Python module which can be installed
using .deb or .rpm packages through
https://doc.arvados.org/v2.0/sdk/python/sdk-python.html. The actual
code lives [here](https://github.com/arvados/arvados/tree/master/sdk/python) and
suggests a local install using
apt-get install libcurl4-openssl-dev libssl1.0-dev
pip3 install --user arvados-python-client
Next update
export PATH=$PATH:$HOME/.local/bin
## Install with GNU Guix
Set up a container:
~/opt/guix/bin/guix environment -C guix --ad-hoc python openssl python-pycurl nss-certs
pip3 install --user arvados-python-client
Pip installed the following modules
arvados-python-client-2.0.1 ciso8601-2.1.3 future-0.18.2 google-api-python-client-1.6.7 httplib2-0.17.1 oauth2client-4.1.3 pyasn1-0.4.8 pyasn1-modules-0.2.8 rsa-4.0 ruamel.yaml-0.15.77 six-1.14.0 uritemplate-3.0.1 ws4py-0.5.1
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