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path: root/workflows/pangenome-generate/pangenome-generate_spoa.cwl
AgeCommit message (Collapse)Author
2020-11-21added abPOA workflow; typosAndreaGuarracino
2020-11-21added reversed_sorting parameter; typosAndreaGuarracino
2020-11-21generalized spoa workflowAndreaGuarracino
2020-11-18Fix typo. Give from_sparql more RAM.Peter Amstutz
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
2020-11-18Add query-to-gfa workflowPeter Amstutz
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
2020-08-19Fix output parametersPeter Amstutz
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
2020-08-19Scaling pangenome generationPeter Amstutz
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
2020-08-19Consolidate steps to scale graph generation workflowPeter Amstutz
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
2020-08-19integrated the deduplication step in the sorting by quality and length scriptAndreaGuarracino
2020-07-27added workflow to sort a multifasta by quality and length, and added the ↵AndreaGuarracino
overall new pangenome generation workflow with SPOA