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bh20-seq-resource
analysis-refactor
fasta-subset-from-query
generate-cwl
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new_assembly_method_field
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yamlfa2ttl
Tool to upload SARS-CoV-2 sequences to BH20 Arvados instance and orchestrate analysis
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create_sra_metadata
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Author
2020-11-11
create_sra_metadata script doesn't trick the quality control about missing ↵
AndreaGuarracino
date aymore
2020-09-28
new countries; updated genbank/sra scripts to manage more specimen sources
AndreaGuarracino
2020-09-28
genbank and sra scripts more picky on the ontologies; added utils.py for ↵
AndreaGuarracino
shared functions
2020-09-04
fixed bugs in in index management and type conversion
AndreaGuarracino
2020-09-04
sra script re-enabled, ready for tests
AndreaGuarracino
2020-09-04
added in the sra script an option to include only a subset of ids
AndreaGuarracino
2020-09-04
sra script updated for managing more locations
AndreaGuarracino
2020-09-04
synchronized the create_sra_metadata.py script with the latest updates
AndreaGuarracino
2020-08-23
genbank/sra scripts update to be more generic with the specimen sources
AndreaGuarracino
2020-08-22
genbank/sra scripts updated to read the dictionaries in a more general way
AndreaGuarracino
2020-07-12
added a suffix to distinguish which script created the error/warning files
AndreaGuarracino
2020-07-10
metadata with missing host_species are not created
AndreaGuarracino
2020-07-10
an output file is created with the accessions for which no YAML file is created
AndreaGuarracino
2020-07-10
updated metadata source
AndreaGuarracino
2020-07-07
if the technology is not found, the YAML file is not created; managed longer ↵
AndreaGuarracino
species strings
2020-07-06
renamed sra script; added seq technology in its additional information field ↵
AndreaGuarracino
if the term …