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path: root/scripts/create_sra_metadata/create_sra_metadata.py
AgeCommit message (Collapse)Author
2020-11-14added a check on host_ageAndreaGuarracino
2020-11-14check empty stringsAndreaGuarracino
2020-11-13fix check date sra scriptAndreaGuarracino
2020-11-13generation of dates a little more robustAndreaGuarracino
2020-11-13to not create YAML files with date before 2019 DecemberAndreaGuarracino
2020-11-12managed the assembly_method in the scripts, doc, and the example templatesAndreaGuarracino
2020-11-11create_sra_metadata script doesn't trick the quality control about missing ↵AndreaGuarracino
date aymore
2020-09-28new countries; updated genbank/sra scripts to manage more specimen sourcesAndreaGuarracino
2020-09-28genbank and sra scripts more picky on the ontologies; added utils.py for ↵AndreaGuarracino
shared functions
2020-09-04fixed bugs in in index management and type conversionAndreaGuarracino
2020-09-04sra script re-enabled, ready for testsAndreaGuarracino
2020-09-04added in the sra script an option to include only a subset of idsAndreaGuarracino
2020-09-04sra script updated for managing more locationsAndreaGuarracino
2020-09-04synchronized the create_sra_metadata.py script with the latest updatesAndreaGuarracino
2020-08-23genbank/sra scripts update to be more generic with the specimen sourcesAndreaGuarracino
2020-08-22genbank/sra scripts updated to read the dictionaries in a more general wayAndreaGuarracino
2020-07-12added a suffix to distinguish which script created the error/warning filesAndreaGuarracino
2020-07-10metadata with missing host_species are not createdAndreaGuarracino
2020-07-10an output file is created with the accessions for which no YAML file is createdAndreaGuarracino
2020-07-07if the technology is not found, the YAML file is not created; managed longer ↵AndreaGuarracino
species strings
2020-07-06renamed sra script; added seq technology in its additional information field ↵AndreaGuarracino
if the term …
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