bh20-seq-resource - Tool to upload SARS-CoV-2 sequences to BH20 Arvados instance and orchestrate analysis

Age	Commit message (Expand)	Author
2020-07-15	Web: add license to input form	Pjotr Prins
2020-07-13	Add ontology and schema for license information. For review.	Pjotr Prins
2020-05-30	Some spelling in the YAML example	Pjotr Prins
2020-05-13	Changed example not to make it a reference genome.	Pjotr Prins
2020-04-30	Last addition/edits to the meta data schema	lltommy
2020-04-28	Decision to settle for float instead of integers for the coverage	lltommy
2020-04-28	Whatever happend to the minimal metadata, I restored it	lltommy
2020-04-28	Adding field 'publication' to the maximum example	lltommy
2020-04-28	Changes to the structure - we use lists now instead of strings where it makes...	lltommy
2020-04-22	updating example with ontology term for host_health_status	lltommy
2020-04-22	Small changes all around, trying to make the importer/metadata better	lltommy
2020-04-21	Update metadata.yaml	Ben Busby
2020-04-21	Updated shex and manditory fields and stuff	lltommy
2020-04-20	Add ShEx validation•••Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>	Peter Amstutz
2020-04-20	Making collection date and collection location MANDATORY fields, turning orci...	lltommy
2020-04-20	Fixing string -> URI in speciman, plus other things	lltommy
2020-04-19	small updates to the yaml schema, updating the example files	lltommy
2020-04-15	submitter_orchid -> submitter_orcid•••"orchid" is the flower :) also use an actual ORCID example <https://orcid.org/0000-0002-1825-0097> which is fictitious person (with a real record!) - dedicated for example use.	Stian Soiland-Reyes
2020-04-15	Changing vaccination URI	lltommy
2020-04-14	Updated yaml schema and examples - plus ShEX shape to go along with it. Still...	lltommy
2020-04-13	Starting to turn values into IRIs ...	lltommy
2020-04-11	Adding descriptions to the yml schema, slight changes to the yml schema	lltommy
2020-04-10	Propagating metadata to output works now.•••Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>	Peter Amstutz
2020-04-10	Fix swapped fasta/fastq•••Replace example sequence with COV19 reference instead of HIV. Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>	Peter Amstutz
2020-04-10	Updating schema and examples, including URIs	lltommy
2020-04-09	Add "sequencefile" for the metadata subject.	Peter Amstutz
2020-04-09	Updating schema and examples. This is still work in progress but we get there	lltommy
2020-04-07	Add metadata validation with schema-salad	Peter Amstutz
2020-04-07	adding dummy metadata qc to the project	lltommy
2020-04-06	README and example	Pjotr Prins