bh20-seq-resource - Tool to upload SARS-CoV-2 sequences to BH20 Arvados instance and orchestrate analysis

Age	Commit message (Collapse)	Author
2020-04-22	Small changes all around, trying to make the importer/metadata better	lltommy

2020-04-21	Update metadata.yaml	Ben Busby

2020-04-21	Updated shex and manditory fields and stuff	lltommy

2020-04-20	Add ShEx validation	Peter Amstutz
	Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
2020-04-20	Making collection date and collection location MANDATORY fields, turning ↵	lltommy
	orcid into IRI
2020-04-20	Fixing string -> URI in speciman, plus other things	lltommy

2020-04-19	small updates to the yaml schema, updating the example files	lltommy

2020-04-15	submitter_orchid -> submitter_orcid	Stian Soiland-Reyes
	"orchid" is the flower :) also use an actual ORCID example <https://orcid.org/0000-0002-1825-0097> which is fictitious person (with a real record!) - dedicated for example use.
2020-04-15	Changing vaccination URI	lltommy

2020-04-14	Updated yaml schema and examples - plus ShEX shape to go along with it. ↵	lltommy
	Still work in progress but getting better and better I guess
2020-04-13	Starting to turn values into IRIs ...	lltommy

2020-04-11	Adding descriptions to the yml schema, slight changes to the yml schema	lltommy

2020-04-10	Propagating metadata to output works now.	Peter Amstutz
	Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
2020-04-10	Fix swapped fasta/fastq	Peter Amstutz
	Replace example sequence with COV19 reference instead of HIV. Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
2020-04-10	Updating schema and examples, including URIs	lltommy

2020-04-09	Add "sequencefile" for the metadata subject.	Peter Amstutz

2020-04-09	Updating schema and examples. This is still work in progress but we get there	lltommy

2020-04-07	Add metadata validation with schema-salad	Peter Amstutz

2020-04-07	adding dummy metadata qc to the project	lltommy

2020-04-06	README and example	Pjotr Prins