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path: root/bh20sequploader/main.py
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2020-04-21Work around CWL content size limit by chunkingPeter Amstutz
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
2020-04-21Working on NCBI importPeter Amstutz
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
2020-04-20Add ShEx validationPeter Amstutz
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
2020-04-13Inject path to find module bh20sequploaderPjotr Prins
2020-04-13Add __init__.py and fix importsPeter Amstutz
2020-04-13Closes #5Pjotr Prins
2020-04-10Fix up fasta/fastq validationPeter Amstutz
2020-04-10Validate & propagate metadataPeter Amstutz
2020-04-10Merge pull request #6 from uniqueg/fa_fq_validationPjotr Prins
validate seq format with magic file
2020-04-10Fixed TypeError: 'module' object is not callablePjotr Prins
2020-04-10validate seq format with magic fileAlex Kanitz
2020-04-09Moved Guix documentation into separate file (as it confused people ;)Pjotr Prins
2020-04-08Fastq now runs through fastq2fasta pipelinePeter Amstutz
then gets added to pangenome analysis.
2020-04-07Add metadata validation with schema-saladPeter Amstutz
2020-04-07Now moves collections into 'validated sequences' projectPeter Amstutz
Improve logging for seq service Fix uploader bug Runs workflow with all validated sequences.
2020-04-06- Added some output and run main() by defaultPjotr Prins
- Disabled ssl checking which does not work if you lack a certificate
2020-04-06Add service to automatically run a workflow on collections uploaded to a ↵Peter Amstutz
project.
2020-04-06Now uploads dataPeter Amstutz
2020-04-06Start projectPeter Amstutz
generated by cgit v1.2.3 (git 2.45.2) at 2024-11-05 23:14:39 +0000