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2020-05-04Remove debug flag from workflow submit•••Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> Peter Amstutz
2020-04-21Increase ram requirement for minimap2•••Add --kickoff to immediately start an analysis workflow. Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> Peter Amstutz
2020-04-13Add __init__.py and fix importsPeter Amstutz
2020-04-10Propagating metadata to output works now.•••Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> Peter Amstutz
2020-04-10Improve fasta/fastq QCPeter Amstutz
2020-04-10Fix swapped fasta/fastq•••Replace example sequence with COV19 reference instead of HIV. Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> Peter Amstutz
2020-04-10Fix up fasta/fastq validationPeter Amstutz
2020-04-10Validate & propagate metadataPeter Amstutz
2020-04-09Propagate metadata to pangenome so it can be merged by workflowPeter Amstutz
2020-04-08Fastq now runs through fastq2fasta pipeline•••then gets added to pangenome analysis. Peter Amstutz
2020-04-07Add metadata validation with schema-saladPeter Amstutz
2020-04-07limit 1Peter Amstutz
2020-04-07Copy recent results to a set destinationPeter Amstutz
2020-04-07Now moves collections into 'validated sequences' project•••Improve logging for seq service Fix uploader bug Runs workflow with all validated sequences. Peter Amstutz
2020-04-06Add service to automatically run a workflow on collections uploaded to a proj...Peter Amstutz
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