| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2020-05-04 | Remove debug flag from workflow submit | Peter Amstutz | |
| Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> | |||
| 2020-04-21 | Increase ram requirement for minimap2 | Peter Amstutz | |
| Add --kickoff to immediately start an analysis workflow. Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> | |||
| 2020-04-10 | Propagating metadata to output works now. | Peter Amstutz | |
| Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> | |||
| 2020-04-10 | Improve fasta/fastq QC | Peter Amstutz | |
| 2020-04-10 | Fix swapped fasta/fastq | Peter Amstutz | |
| Replace example sequence with COV19 reference instead of HIV. Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> | |||
| 2020-04-10 | Fix up fasta/fastq validation | Peter Amstutz | |
| 2020-04-10 | Validate & propagate metadata | Peter Amstutz | |
| 2020-04-09 | Propagate metadata to pangenome so it can be merged by workflow | Peter Amstutz | |
| 2020-04-08 | Fastq now runs through fastq2fasta pipeline | Peter Amstutz | |
| then gets added to pangenome analysis. | |||
| 2020-04-07 | Add metadata validation with schema-salad | Peter Amstutz | |
| 2020-04-07 | limit 1 | Peter Amstutz | |
| 2020-04-07 | Copy recent results to a set destination | Peter Amstutz | |
| 2020-04-07 | Now moves collections into 'validated sequences' project | Peter Amstutz | |
| Improve logging for seq service Fix uploader bug Runs workflow with all validated sequences. | |||
| 2020-04-06 | Add service to automatically run a workflow on collections uploaded to a ↵ | Peter Amstutz | |
| project. | |||
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index : bh20-seq-resource | |
| Tool to upload SARS-CoV-2 sequences to BH20 Arvados instance and orchestrate analysis |
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