Age | Commit message (Collapse) | Author | |
---|---|---|---|
2020-11-12 | managed the assembly_method in the scripts, doc, and the example templates | AndreaGuarracino | |
2020-11-12 | updated alignment_protocol field in the script, doc, and the example templates | AndreaGuarracino | |
2020-11-12 | Trying to fix the submitter shape, shex and yaml | lltommy | |
2020-11-12 | Proposed new technology shape/yaml structure | lltommy | |
2020-11-11 | Support uploading new metadata only | Peter Amstutz | |
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> | |||
2020-11-11 | Merge branch 'master' of https://github.com/arvados/bh20-seq-resource | lltommy | |
2020-11-11 | Adding GPS coordinates and contitent membership for Memphis and Canada | lltommy | |
2020-11-11 | Make collect-seqs skip bad inputs. | Peter Amstutz | |
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> | |||
2020-11-11 | Documenting and QC of YAML. Some conflicts discovered that need review | lltommy | |
2020-11-11 | Fix resolving permalinks such as ↵ | Pjotr Prins | |
http://covid19.genenetwork.org/resource/MT326090.1 | |||
2020-11-11 | Notes | Pjotr Prins | |
2020-11-11 | Conflict in guix-deploy | Pjotr Prins | |
2020-11-11 | Deploy | PubSeq webserver | |
2020-11-11 | Deployment | Pjotr Prins | |
2020-11-11 | Move files to correct folder | lltommy | |
2020-11-11 | Merge branch 'master' of https://github.com/arvados/bh20-seq-resource | lltommy | |
2020-11-11 | Adding covid death and covid cases per country as additional background ↵ | lltommy | |
information | |||
2020-11-11 | create_sra_metadata script doesn't trick the quality control about missing ↵ | AndreaGuarracino | |
date aymore | |||
2020-11-11 | Merge branch 'master' of https://github.com/arvados/bh20-seq-resource | lltommy | |
2020-11-11 | restricting specimen_source to obo:NCIT which would have prevented the ncbi ↵ | lltommy | |
taxon bug | |||
2020-11-10 | Valid uploads with sequence_label in PubSeq replaces old one. | Peter Amstutz | |
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> | |||
2020-11-10 | Merge pull request #116 from arvados/uuid-for-resource | Peter Amstutz | |
Use arvados uuids for RDF subjects. | |||
2020-11-10 | Use arvados uuids for RDF subjects.uuid-for-resource | Peter Amstutz | |
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> | |||
2020-11-10 | Merge pull request #114 from BonfaceKilz/feature/add-twitter-feed | Pjotr Prins | |
Feature/add twitter feed | |||
2020-11-10 | Demo links to permalink for countries | Pjotr Prins | |
2020-11-10 | Delete unused endpoint | BonfaceKilz | |
* bh20simplewebuploader/main.py (feed): Remove it. | |||
2020-11-10 | Fetch tweets from the correct redis queue | BonfaceKilz | |
* bh20simplewebuploader/main.py (send_home): Replace "gn2-tweet-score" with "bh20-tweet-score". | |||
2020-11-10 | virtuoso: no-cache | Pjotr Prins | |
2020-11-10 | virtuoso: header change | Pjotr Prins | |
2020-11-10 | Virtuoso: run script | Pjotr Prins | |
2020-11-10 | Document Arvados runner | Pjotr Prins | |
2020-11-10 | virtuoso: Added a --no-cache option | Pjotr Prins | |
2020-11-10 | Add tweet feed | BonfaceKilz | |
* bh20simplewebuploader/main.py (send_home): Fetch tweets from Redis. * bh20simplewebuploader/static/main.css: Add styles for tweets * bh20simplewebuploader/templates/home.html: Add tweet section in frontpage. | |||
2020-11-09 | Merge pull request #105 from arvados/fasta-subset-from-query | Peter Amstutz | |
Extract subset of the all-sequences fasta by running a sparql query. Also includes some tweaks to the permalinks. | |||
2020-11-09 | Extract PDH from result and construct URIs from thatfasta-subset-from-query | Peter Amstutz | |
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> | |||
2020-11-09 | Make resource link work for both portable data hashes and sample id | Peter Amstutz | |
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> | |||
2020-11-09 | Make it so "pangenome analysis" only runs collect-seqs. | Peter Amstutz | |
Will ensure that metadata is kept up to date. GFA isn't being generated. Will introduce new workflow that uses from_sparql to analyze a subset. Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> | |||
2020-11-09 | Rename schema param to metadataSchema | Peter Amstutz | |
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> | |||
2020-11-09 | Extract subset of the all-sequences fasta by running a sparql query. | Peter Amstutz | |
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> | |||
2020-11-09 | Adding some descriptions to our static vocabulary | lltommy | |
2020-11-08 | Uploaded UTHSC sequences | Pjotr Prins | |
2020-11-08 | UTHSC samples | Pjotr Prins | |
2020-11-07 | Tests: added SPARQL test | Pjotr Prins | |
2020-11-07 | Tests: add runner and frame for SPARQL | Pjotr Prins | |
2020-11-07 | RDF: use URIs | Pjotr Prins | |
2020-11-07 | Test: simplify and add regression test | Pjotr Prins | |
2020-11-07 | Fixed the License error (https!!) | Pjotr Prins | |
2020-11-07 | Running tests without network | Pjotr Prins | |
2020-11-07 | Added failing unit test: No matching triples found for predicate cc:License | Pjotr Prins | |
2020-11-06 | Add location | Pjotr Prins | |