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bh20-seq-resource
analysis-refactor
fasta-subset-from-query
generate-cwl
master
new_assembly_method_field
pangenome_workflow_abpoa
upload-download-status
uuid-for-resource
yamlfa2ttl
Tool to upload SARS-CoV-2 sequences to BH20 Arvados instance and orchestrate analysis
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Author
2020-11-06
Adding Tennessee items
Pjotr Prins
2020-11-06
UTHSC upload info
Pjotr Prins
2020-11-06
Working on upload
Pjotr Prins
2020-11-05
Add 10 samples
Pjotr Prins
2020-11-05
Added note
Pjotr Prins
2020-11-05
Using 'DOCS' instead of 'BLOG'
Pjotr Prins
2020-11-05
Updated API doc
Pjotr Prins
2020-11-05
Add Redis to web deps
BonfaceKilz
2020-11-04
Update pip3 install command in README
BonfaceKilz
2020-11-04
Fix typo
BonfaceKilz
2020-11-04
virtuoso-ose: install and settings
Pjotr Prins
2020-11-04
fixed sequence_assembly_method field description
AndreaGuarracino
2020-11-04
Test data set
Pjotr Prins
2020-10-30
Adding some more wikidata locations
lltommy
2020-10-28
Country information
Pjotr Prins
2020-10-28
List by country and added to map
Pjotr Prins
2020-10-28
Fix DEMO links
Pjotr Prins
2020-10-28
Adding more metadata to resource uri
Pjotr Prins
2020-10-28
Create permalink and some output
Pjotr Prins
2020-10-28
Use Flask url_for to make relative routes work
Pjotr Prins
2020-10-28
Fix CSS errors
Pjotr Prins
2020-10-27
Commented in uploader main.py
Pjotr Prins
2020-10-27
Updating docs
Pjotr Prins
2020-10-26
Update blog
Pjotr Prins
2020-10-26
Minor CSS for the map
Pjotr Prins
2020-10-26
Improved map to show sequences in one view
Pjotr Prins
2020-10-26
Adding upload metadata examples
Pjotr Prins
2020-10-26
Textual updates
Pjotr Prins
2020-10-06
Create .dockstore.yml
Michael R. Crusoe
2020-10-01
sequence divergence to 5% for minimap2 in the FASTA quality control
AndreaGuarracino
2020-10-01
show more information in the error messages
AndreaGuarracino
2020-09-29
esr_samples script refactoring; added a reference of the esr_samples script ↵
AndreaGuarracino
in the blog as an example of how to parse metadata
2020-09-28
new countries; updated genbank/sra scripts to manage more specimen sources
AndreaGuarracino
2020-09-28
genbank and sra scripts more picky on the ontologies; added utils.py for ↵
AndreaGuarracino
shared functions
2020-09-27
Virtuoso uploader: instructions
Pjotr Prins
2020-09-27
Virtuoso uploader: explicit output
Pjotr Prins
2020-09-27
Fixing missing dot in .ttl file
lltommy
2020-09-27
Adding script supporting semantic enrichment
lltommy
2020-09-27
Adding a few labels to other used vocabs
lltommy
2020-09-27
Updated country labels and GPS coordinates
lltommy
2020-09-26
script for processing the metadata of the ESR samples; moved ↵
AndreaGuarracino
delete_entries_on_arvados script in scripts directory
2020-09-25
added new New Zealand entries
AndreaGuarracino
2020-09-05
increased the quality filter threshold
AndreaGuarracino
2020-09-04
fixed bugs in in index management and type conversion
AndreaGuarracino
2020-09-04
sra script re-enabled, ready for tests
AndreaGuarracino
2020-09-04
added in the sra script an option to include only a subset of ids
AndreaGuarracino
2020-09-04
sra script updated for managing more locations
AndreaGuarracino
2020-09-04
synchronized the create_sra_metadata.py script with the latest updates
AndreaGuarracino
2020-08-29
fixed few countries ontology terms; added a new species
AndreaGuarracino
2020-08-28
added script to remove entries on Arvados
AndreaGuarracino
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