index
:
bh20-seq-resource
analysis-refactor
fasta-subset-from-query
generate-cwl
master
new_assembly_method_field
pangenome_workflow_abpoa
upload-download-status
uuid-for-resource
yamlfa2ttl
Tool to upload SARS-CoV-2 sequences to BH20 Arvados instance and orchestrate analysis
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Author
2020-11-11
Merge branch 'master' of https://github.com/arvados/bh20-seq-resource
lltommy
2020-11-11
Adding GPS coordinates and contitent membership for Memphis and Canada
lltommy
2020-11-11
Make collect-seqs skip bad inputs.
Peter Amstutz
2020-11-11
Documenting and QC of YAML. Some conflicts discovered that need review
lltommy
2020-11-11
Fix resolving permalinks such as http://covid19.genenetwork.org/resource/MT32...
Pjotr Prins
2020-11-11
Notes
Pjotr Prins
2020-11-11
Conflict in guix-deploy
Pjotr Prins
2020-11-11
Deploy
PubSeq webserver
2020-11-11
Deployment
Pjotr Prins
2020-11-11
Move files to correct folder
lltommy
2020-11-11
Merge branch 'master' of https://github.com/arvados/bh20-seq-resource
lltommy
2020-11-11
Adding covid death and covid cases per country as additional background infor...
lltommy
2020-11-11
create_sra_metadata script doesn't trick the quality control about missing da...
AndreaGuarracino
2020-11-11
Merge branch 'master' of https://github.com/arvados/bh20-seq-resource
lltommy
2020-11-11
restricting specimen_source to obo:NCIT which would have prevented the ncbi t...
lltommy
2020-11-10
Valid uploads with sequence_label in PubSeq replaces old one.
Peter Amstutz
2020-11-10
Merge pull request #116 from arvados/uuid-for-resource
Peter Amstutz
2020-11-10
Use arvados uuids for RDF subjects.
uuid-for-resource
Peter Amstutz
2020-11-10
Merge pull request #114 from BonfaceKilz/feature/add-twitter-feed
Pjotr Prins
2020-11-10
Demo links to permalink for countries
Pjotr Prins
2020-11-10
Delete unused endpoint
BonfaceKilz
2020-11-10
Fetch tweets from the correct redis queue
BonfaceKilz
2020-11-10
virtuoso: no-cache
Pjotr Prins
2020-11-10
virtuoso: header change
Pjotr Prins
2020-11-10
Virtuoso: run script
Pjotr Prins
2020-11-10
Document Arvados runner
Pjotr Prins
2020-11-10
virtuoso: Added a --no-cache option
Pjotr Prins
2020-11-10
Add tweet feed
BonfaceKilz
2020-11-09
Merge pull request #105 from arvados/fasta-subset-from-query
Peter Amstutz
2020-11-09
Extract PDH from result and construct URIs from that
fasta-subset-from-query
Peter Amstutz
2020-11-09
Make resource link work for both portable data hashes and sample id
Peter Amstutz
2020-11-09
Make it so "pangenome analysis" only runs collect-seqs.
Peter Amstutz
2020-11-09
Rename schema param to metadataSchema
Peter Amstutz
2020-11-09
Extract subset of the all-sequences fasta by running a sparql query.
Peter Amstutz
2020-11-09
Adding some descriptions to our static vocabulary
lltommy
2020-11-08
Uploaded UTHSC sequences
Pjotr Prins
2020-11-08
UTHSC samples
Pjotr Prins
2020-11-07
Tests: added SPARQL test
Pjotr Prins
2020-11-07
Tests: add runner and frame for SPARQL
Pjotr Prins
2020-11-07
RDF: use URIs
Pjotr Prins
2020-11-07
Test: simplify and add regression test
Pjotr Prins
2020-11-07
Fixed the License error (https!!)
Pjotr Prins
2020-11-07
Running tests without network
Pjotr Prins
2020-11-07
Added failing unit test: No matching triples found for predicate cc:License
Pjotr Prins
2020-11-06
Add location
Pjotr Prins
2020-11-06
Add country entries that miss coordinates
Pjotr Prins
2020-11-06
Country trouble shooting
Pjotr Prins
2020-11-06
Uploader script improvements
Pjotr Prins
2020-11-06
Countries
Pjotr Prins
2020-11-06
Using correct wikidata geo link
Pjotr Prins
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