Age | Commit message (Collapse) | Author | |
---|---|---|---|
2020-04-23 | added nasal swab for several new IDs | Andrea Guarracino | |
2020-04-23 | updated IDs list - 2020/04/23 - 1436 IDs | Andrea Guarracino | |
2020-04-23 | adding a submitter comment field | lltommy | |
2020-04-23 | Adding a third sequence technology option | lltommy | |
2020-04-23 | Merge pull request #30 from adamnovak/patch-3 | LLTommy | |
Additional improvements to web UI | |||
2020-04-23 | Merge branch 'master' into patch-3 | LLTommy | |
2020-04-23 | Merge pull request #33 from AndreaGuarracino/patch-9 | LLTommy | |
script updating | |||
2020-04-23 | Merge pull request #32 from AndreaGuarracino/patch-10 | LLTommy | |
dictionaries updating and creation | |||
2020-04-22 | code cleaning, checking and writing missing term on file | Andrea Guarracino | |
- the script checks for country and specimen_source - now the missing terms are written on a tsv file | |||
2020-04-22 | created dict for host health status | Andrea Guarracino | |
2020-04-22 | added some rows in the speciesman dict | Andrea Guarracino | |
2020-04-22 | added some rows in the ncbi_countries dict | Andrea Guarracino | |
2020-04-22 | updated IDs list - 2020/04/22 | Andrea Guarracino | |
2020-04-22 | Fixing ShEx expression, one ? too much | lltommy | |
2020-04-22 | Forgot to add _id | lltommy | |
2020-04-22 | updating example with ontology term for host_health_status | lltommy | |
2020-04-22 | Including restrictions to the host status | lltommy | |
2020-04-22 | Small changes all around, trying to make the importer/metadata better | lltommy | |
2020-04-22 | Merge branch 'master' of https://github.com/arvados/bh20-seq-resource | lltommy | |
2020-04-22 | Merge pull request #31 from DCGenomics/patch-1 | LLTommy | |
Update metadata.yaml | |||
2020-04-22 | Merge branch 'master' of https://github.com/arvados/bh20-seq-resource | lltommy | |
2020-04-21 | Update metadata.yaml | Ben Busby | |
2020-04-21 | Increase ram requirement for minimap2 | Peter Amstutz | |
Add --kickoff to immediately start an analysis workflow. Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> | |||
2020-04-21 | Workaround CWL limit by chunking file list | Peter Amstutz | |
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> | |||
2020-04-21 | Work around CWL content size limit by chunking | Peter Amstutz | |
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> | |||
2020-04-21 | add noLinkCheck to specimen_source2 | Peter Amstutz | |
2020-04-21 | Tweak handling of "coverage" also fix typo | Peter Amstutz | |
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> | |||
2020-04-21 | Working on NCBI import | Peter Amstutz | |
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> | |||
2020-04-21 | fixing silly mistake | lltommy | |
2020-04-21 | Updated shex and manditory fields and stuff | lltommy | |
2020-04-20 | Add readsMergeDedup.fasta to output | Peter Amstutz | |
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> | |||
2020-04-20 | Make sure there is a newline in relabeled fasta (but no blank lines) | Peter Amstutz | |
2020-04-20 | Reconsidered these should be noLinkCheck | Peter Amstutz | |
2020-04-20 | Add identity:true to collection_location | Peter Amstutz | |
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> | |||
2020-04-20 | Schema changes from @LLTommy | Peter Amstutz | |
2020-04-20 | Better handling of duplicate sequences | Peter Amstutz | |
Also save original fasta label in metadata | |||
2020-04-20 | Use a date picker for any string 'date' | Adam Novak | |
2020-04-20 | Support any number of series fields | Adam Novak | |
2020-04-20 | Nicer headings for xxx2 fields and float support | Adam Novak | |
2020-04-20 | Make doc not contradict option list | Adam Novak | |
2020-04-20 | Put back Intersex with the closest PATO equivalent | Adam Novak | |
These options still disagree with the doc string in the schema. | |||
2020-04-20 | Relabel sequences to match metadata subjects. | Peter Amstutz | |
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> | |||
2020-04-20 | Move workflows into main repo | Peter Amstutz | |
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> | |||
2020-04-20 | Add ShEx validation | Peter Amstutz | |
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> | |||
2020-04-20 | Merge pull request #29 from inutano/fix-mappings | LLTommy | |
fix MinION to ONT | |||
2020-04-20 | Merge pull request #28 from AndreaGuarracino/patch-8 | LLTommy | |
fixed missing variable and managed comma in dicts | |||
2020-04-20 | fix MinION to ONT | Tazro Inutano Ohta | |
2020-04-20 | Making collection date and collection location MANDATORY fields, turning ↵ | lltommy | |
orcid into IRI | |||
2020-04-20 | Fixing string -> URI in speciman, plus other things | lltommy | |
2020-04-19 | added 'np/op' control for specimen_source | Andrea Guarracino | |