aboutsummaryrefslogtreecommitdiff
AgeCommit message (Expand)Author
2020-07-15License RDFPjotr Prins
2020-07-15Add RDF outputPjotr Prins
2020-07-15Merge pull request #95 from AndreaGuarracino/patch-1•••little scripts improvements, metadata update for SRA samplesPjotr Prins
2020-07-15Web: add license to input formPjotr Prins
2020-07-15Load metadata locally without pkg_resourcesPjotr Prins
2020-07-15Update Guix installPjotr Prins
2020-07-15Merge pull request #97 from pjotrp/master•••Add license metadata to recordPjotr Prins
2020-07-13Add ontology and schema for license information. For review.Pjotr Prins
2020-07-12added a suffix to distinguish which script created the error/warning filesAndreaGuarracino
2020-07-12Generate About pagePjotr Prins
2020-07-12Docs: started on metadata modificationPjotr Prins
2020-07-12CounterDBPjotr Prins
2020-07-12About page: add Andrea and Erik; add CC0 license linkPjotr Prins
2020-07-12Remove duplicate counterPjotr Prins
2020-07-12Remove duplicate counterPjotr Prins
2020-07-12Remove duplicate counterPjotr Prins
2020-07-10metadata with missing host_species are not createdAndreaGuarracino
2020-07-10an output file is created with the accessions for which no YAML file is createdAndreaGuarracino
2020-07-10updated metadata sourceAndreaGuarracino
2020-07-10other term for Homo sapiens (for SRA samples)Andrea Guarracino
2020-07-09Skip certificate check - this was upstreamed in Arvados, so we can remove laterPjotr Prins
2020-07-09Merge pull request #93 from AndreaGuarracino/patch-22•••fixed bug that lead to invalid sample_sequencing_technology valuesPjotr Prins
2020-07-09fixed bug that lead to invalid sample_sequencing_technology valuesAndrea Guarracino
2020-07-08Adding missing GPS coordinates et alllltommy
2020-07-08Try to fix lab_address wrong predicate, fix submitter shape on the way and ho...lltommy
2020-07-08Merge pull request #92 from arvados/upload-download-status•••Split upload tab. Add upload status tab. Also a bunch of QC and uploader improvements.Peter Amstutz
2020-07-08Give uploader an option to trust local validation (for batch imports)•••Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> upload-download-statusPeter Amstutz
2020-07-08Uploader checks for duplicatesPeter Amstutz
2020-07-08Avoid redundant loading of schemaPeter Amstutz
2020-07-08Add --revalidate and fix checking/updating properties.Peter Amstutz
2020-07-08Hack in a valid-uri check•••Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> Peter Amstutz
2020-07-08Get count from arvados•••Separate pending/rejected tables "Lastest results" is latest successful run. Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> Peter Amstutz
2020-07-08Fetch status as anonymous user•••Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> Peter Amstutz
2020-07-08Split upload tab. Add upload status tab.•••Add more direct links on download page. Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> Peter Amstutz
2020-07-08Merge pull request #89 from proccaserra/patch-1•••Update form.htmlLLTommy
2020-07-07Merge branch 'master' of https://github.com/arvados/bh20-seq-resourcelltommy
2020-07-07Adding some more country labels. Some GPS are still missing, will handle in t...lltommy
2020-07-07Adding sequencer labelslltommy
2020-07-07Merge pull request #90 from AndreaGuarracino/patch-21•••genbank and sra scripts update, new terms in the ontology dictionariesLLTommy
2020-07-07--print-status=html creates html reportPeter Amstutz
2020-07-07fix missing authors #91AndreaGuarracino
2020-07-07minimap2 returns nothing when there is no alignment.Peter Amstutz
2020-07-07if the technology is not found, the YAML file is not created; managed longer ...AndreaGuarracino
2020-07-07Use minimap2 instead of clustalw for fasta QC•••Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> Peter Amstutz
2020-07-06renamed sra script; added seq technology in its additional information field ...AndreaGuarracino
2020-07-06fix ncbi_countries dictionaryAndreaGuarracino
2020-07-06new terms in the ncbi_countries dictionaryAndrea Guarracino
2020-07-06added seq technology in its additional information field if the term is missi...AndreaGuarracino
2020-07-06updated SraExperimentPackage infoAndreaGuarracino
2020-07-06two more terms in the ncbi_sequencing_technology dictionaryAndrea Guarracino
generated by cgit v1.2.3 (git 2.48.1) at 2025-04-11 09:51:15 +0000