bh20-seq-resource - Tool to upload SARS-CoV-2 sequences to BH20 Arvados instance and orchestrate analysis

Age	Commit message (Expand)	Author
2020-11-06	Working on upload	Pjotr Prins
2020-11-05	Add 10 samples	Pjotr Prins
2020-11-05	Added note	Pjotr Prins
2020-11-05	Using 'DOCS' instead of 'BLOG'	Pjotr Prins
2020-11-05	Updated API doc	Pjotr Prins
2020-11-05	Add Redis to web deps	BonfaceKilz
2020-11-04	Update pip3 install command in README	BonfaceKilz
2020-11-04	Fix typo	BonfaceKilz
2020-11-04	virtuoso-ose: install and settings	Pjotr Prins
2020-11-04	fixed sequence_assembly_method field description	AndreaGuarracino
2020-11-04	Test data set	Pjotr Prins
2020-10-30	Adding some more wikidata locations	lltommy
2020-10-28	Country information	Pjotr Prins
2020-10-28	List by country and added to map	Pjotr Prins
2020-10-28	Fix DEMO links	Pjotr Prins
2020-10-28	Adding more metadata to resource uri	Pjotr Prins
2020-10-28	Create permalink and some output	Pjotr Prins
2020-10-28	Use Flask url_for to make relative routes work	Pjotr Prins
2020-10-28	Fix CSS errors	Pjotr Prins
2020-10-27	Commented in uploader main.py	Pjotr Prins
2020-10-27	Updating docs	Pjotr Prins
2020-10-26	Update blog	Pjotr Prins
2020-10-26	Minor CSS for the map	Pjotr Prins
2020-10-26	Improved map to show sequences in one view	Pjotr Prins
2020-10-26	Adding upload metadata examples	Pjotr Prins
2020-10-26	Textual updates	Pjotr Prins
2020-10-06	Create .dockstore.yml	Michael R. Crusoe
2020-10-01	sequence divergence to 5% for minimap2 in the FASTA quality control	AndreaGuarracino
2020-10-01	show more information in the error messages	AndreaGuarracino
2020-09-29	esr_samples script refactoring; added a reference of the esr_samples script i...	AndreaGuarracino
2020-09-28	new countries; updated genbank/sra scripts to manage more specimen sources	AndreaGuarracino
2020-09-28	genbank and sra scripts more picky on the ontologies; added utils.py for shar...	AndreaGuarracino
2020-09-27	Virtuoso uploader: instructions	Pjotr Prins
2020-09-27	Virtuoso uploader: explicit output	Pjotr Prins
2020-09-27	Fixing missing dot in .ttl file	lltommy
2020-09-27	Adding script supporting semantic enrichment	lltommy
2020-09-27	Adding a few labels to other used vocabs	lltommy
2020-09-27	Updated country labels and GPS coordinates	lltommy
2020-09-26	script for processing the metadata of the ESR samples; moved delete_entries_o...	AndreaGuarracino
2020-09-25	added new New Zealand entries	AndreaGuarracino
2020-09-05	increased the quality filter threshold	AndreaGuarracino
2020-09-04	fixed bugs in in index management and type conversion	AndreaGuarracino
2020-09-04	sra script re-enabled, ready for tests	AndreaGuarracino
2020-09-04	added in the sra script an option to include only a subset of ids	AndreaGuarracino
2020-09-04	sra script updated for managing more locations	AndreaGuarracino
2020-09-04	synchronized the create_sra_metadata.py script with the latest updates	AndreaGuarracino
2020-08-29	fixed few countries ontology terms; added a new species	AndreaGuarracino
2020-08-28	added script to remove entries on Arvados	AndreaGuarracino
2020-08-28	local QC is optional	AndreaGuarracino
2020-08-28	added control (locally and in the validation) that sample_id has to be the sa...	AndreaGuarracino