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2020-05-12Virtuoso uploader: does not delete graph yetPjotr Prins
2020-05-12Update graph scriptPjotr Prins
2020-05-12Merge branch 'master' of github.com:arvados/bh20-seq-resourcePjotr Prins
2020-05-11Merge pull request #49 from mr-c/add_pangenome_browser_prepPeter Amstutz
2020-05-06Adding additional frontend option (PATO_0001340) to QClltommy
2020-05-06Merge branch 'master' of github.com:arvados/bh20-seq-resourcePjotr Prins
2020-05-06Merge pull request #50 from adamnovak/upload-listsPjotr Prins
2020-05-06Merge branch 'master' of github.com:arvados/bh20-seq-resourcePjotr Prins
2020-05-05Add back necessary form-swapping javascriptAdam Novak
2020-05-05Use invisible class instead of hidden classAdam Novak
2020-05-05Add JS at front end for lists, and date support on backendAdam Novak
2020-05-05Handle doubles and lists on the backendAdam Novak
2020-05-05preserve the directory layout of segmentation.pyMichael R. Crusoe
2020-05-05move some tools into the shared repoMichael R. Crusoe
2020-05-04Sort input to hopefully get container reusePeter Amstutz
2020-05-04bump jerven/spodgi image to 0.0.6Peter Amstutz
2020-05-04Remove debug flag from workflow submitPeter Amstutz
2020-05-04add pangenome browser prepMichael R. Crusoe
2020-05-04Increase RAM for minimap2Peter Amstutz
2020-05-03Set a RAM requirement on odgi_to_rdf to influence it to run on c5Peter Amstutz
2020-05-01Set verison tag on spodgi container imagePeter Amstutz
2020-04-30Merge pull request #47 from AndreaGuarracino/patch-15Peter Amstutz
2020-04-30fixed UO_0000036 for yearAndrea Guarracino
2020-04-30Add py-dateutil to dependencies.Peter Amstutz
2020-04-30Handle running in a container with no usernamePeter Amstutz
2020-04-30Last addition/edits to the meta data schemalltommy
2020-04-30Merge pull request #41 from AndreaGuarracino/patch-14LLTommy
2020-04-30Import script fixesPeter Amstutz
2020-04-30Wrap import script to run as a workflowPeter Amstutz
2020-04-29Fix description content type for PyPiPeter Amstutz
2020-04-29Use subprocess invocation is backwards compatible with Python 3.5Peter Amstutz
2020-04-29Add referencePeter Amstutz
2020-04-29the date is now handled more formallyAndrea Guarracino
2020-04-29fixing JS due to name changes so the demo works againlltommy
2020-04-29Reverting country list back, something went wrong therelltommy
2020-04-29Merge pull request #40 from AndreaGuarracino/patch-13LLTommy
2020-04-28updated to manage list fields and added new control on nasopharyngeal/throat ...Andrea Guarracino
2020-04-28Updated with new termsAndrea Guarracino
2020-04-28Updated with new termsAndrea Guarracino
2020-04-28Updated - 1731 IDs - 2020/04/28Andrea Guarracino
2020-04-28Merge branch 'master' of https://github.com/arvados/bh20-seq-resourcelltommy
2020-04-28Decision to settle for float instead of integers for the coveragelltommy
2020-04-28Update spodgi docker imagePeter Amstutz
2020-04-28Call clustalw to compare sequence to referencePeter Amstutz
2020-04-28Whatever happend to the minimal metadata, I restored itlltommy
2020-04-28Adding field 'publication' to the maximum examplelltommy
2020-04-28Changes to the structure - we use lists now instead of strings where it makes...lltommy
2020-04-26Add enrichment vocabularies to gitlltommy
2020-04-26Pushing some new functions, rename some old oneslltommy
2020-04-26Adding a function, correcting some variable nameslltommy
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