Age | Commit message (Collapse) | Author | |
---|---|---|---|
2020-05-13 | Guix version of uploader works. Updated instructions. | Pjotr Prins | |
2020-05-13 | Changed example not to make it a reference genome. | Pjotr Prins | |
2020-05-13 | Merge branch 'master' of github.com:pjotrp/bh20-seq-resource | Pjotr Prins | |
2020-05-13 | Virtuoso: split named graphs | Pjotr Prins | |
2020-05-13 | Modified BLOG | Pjotr Prins | |
2020-05-12 | Virtuoso uploader: does not delete graph yet | Pjotr Prins | |
2020-05-12 | Update graph script | Pjotr Prins | |
2020-05-12 | Merge branch 'master' of github.com:arvados/bh20-seq-resource | Pjotr Prins | |
2020-05-11 | Merge pull request #49 from mr-c/add_pangenome_browser_prep | Peter Amstutz | |
add pangenome browser prep | |||
2020-05-06 | Adding additional frontend option (PATO_0001340) to QC | lltommy | |
2020-05-06 | Merge branch 'master' of github.com:arvados/bh20-seq-resource | Pjotr Prins | |
2020-05-06 | Merge pull request #50 from adamnovak/upload-lists | Pjotr Prins | |
Add support for lists in the web uploader | |||
2020-05-06 | Merge branch 'master' of github.com:arvados/bh20-seq-resource | Pjotr Prins | |
2020-05-05 | Add back necessary form-swapping javascript | Adam Novak | |
This partially reverts 03cbed808805ccdbff639eaa67e8f8b26c7275b3. Unless we actually take the inactive form fields out of the form in the DOM, their "required" attributes will prevent form submission. We can't just hide them. | |||
2020-05-05 | Use invisible class instead of hidden class | Adam Novak | |
2020-05-05 | Add JS at front end for lists, and date support on backend | Adam Novak | |
2020-05-05 | Handle doubles and lists on the backend | Adam Novak | |
2020-05-05 | preserve the directory layout of segmentation.py | Michael R. Crusoe | |
2020-05-05 | move some tools into the shared repo | Michael R. Crusoe | |
2020-05-04 | Sort input to hopefully get container reuse | Peter Amstutz | |
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> | |||
2020-05-04 | bump jerven/spodgi image to 0.0.6 | Peter Amstutz | |
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> | |||
2020-05-04 | Remove debug flag from workflow submit | Peter Amstutz | |
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> | |||
2020-05-04 | add pangenome browser prep | Michael R. Crusoe | |
2020-05-04 | Increase RAM for minimap2 | Peter Amstutz | |
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> | |||
2020-05-03 | Set a RAM requirement on odgi_to_rdf to influence it to run on c5 | Peter Amstutz | |
(because on a t3 it takes forever) Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> | |||
2020-05-01 | Set verison tag on spodgi container image | Peter Amstutz | |
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> | |||
2020-04-30 | Merge pull request #47 from AndreaGuarracino/patch-15 | Peter Amstutz | |
fixed UO_0000036 for year | |||
2020-04-30 | fixed UO_0000036 for year | Andrea Guarracino | |
2020-04-30 | Add py-dateutil to dependencies. | Peter Amstutz | |
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> | |||
2020-04-30 | Handle running in a container with no username | Peter Amstutz | |
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> | |||
2020-04-30 | Last addition/edits to the meta data schema | lltommy | |
2020-04-30 | Merge pull request #41 from AndreaGuarracino/patch-14 | LLTommy | |
the date is now handled more formally (YYYY-MM-DD) | |||
2020-04-30 | Import script fixes | Peter Amstutz | |
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> | |||
2020-04-30 | Wrap import script to run as a workflow | Peter Amstutz | |
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> | |||
2020-04-29 | Fix description content type for PyPi | Peter Amstutz | |
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> | |||
2020-04-29 | Use subprocess invocation is backwards compatible with Python 3.5 | Peter Amstutz | |
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> | |||
2020-04-29 | Add reference | Peter Amstutz | |
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> | |||
2020-04-29 | the date is now handled more formally | Andrea Guarracino | |
all the date are saved as "YYYY-MM-DD" | |||
2020-04-29 | fixing JS due to name changes so the demo works again | lltommy | |
2020-04-29 | Reverting country list back, something went wrong there | lltommy | |
2020-04-29 | Merge pull request #40 from AndreaGuarracino/patch-13 | LLTommy | |
updated the script to manage list field, and added new terms into the dicts | |||
2020-04-28 | updated to manage list fields and added new control on nasopharyngeal/throat ↵ | Andrea Guarracino | |
swab | |||
2020-04-28 | Updated with new terms | Andrea Guarracino | |
2020-04-28 | Updated with new terms | Andrea Guarracino | |
2020-04-28 | Updated - 1731 IDs - 2020/04/28 | Andrea Guarracino | |
2020-04-28 | Merge branch 'master' of https://github.com/arvados/bh20-seq-resource | lltommy | |
2020-04-28 | Decision to settle for float instead of integers for the coverage | lltommy | |
2020-04-28 | Update spodgi docker image | Peter Amstutz | |
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> | |||
2020-04-28 | Call clustalw to compare sequence to reference | Peter Amstutz | |
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com> | |||
2020-04-28 | Whatever happend to the minimal metadata, I restored it | lltommy | |