index
:
bh20-seq-resource
analysis-refactor
fasta-subset-from-query
generate-cwl
master
new_assembly_method_field
pangenome_workflow_abpoa
upload-download-status
uuid-for-resource
yamlfa2ttl
Tool to upload SARS-CoV-2 sequences to BH20 Arvados instance and orchestrate analysis
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Author
2020-11-16
About page
Pjotr Prins
2020-11-16
Modify menu
Pjotr Prins
2020-11-15
removed provider_sample_id references
AndreaGuarracino
2020-11-15
fix sequencing_coverage
AndreaGuarracino
2020-11-15
fixed typos in the integer cast
AndreaGuarracino
2020-11-15
added a check on host_age
AndreaGuarracino
2020-11-14
added a check on host_age
AndreaGuarracino
2020-11-14
check empty strings
AndreaGuarracino
2020-11-14
SPARQL playground: additional examples
lltommy
2020-11-14
SPARQLplayground: Adding additional example
lltommy
2020-11-14
Adding an additional example to the SPARQL playground
lltommy
2020-11-13
fix check date sra script
AndreaGuarracino
2020-11-13
generation of dates a little more robust
AndreaGuarracino
2020-11-13
to not create YAML files with date before 2019 December
AndreaGuarracino
2020-11-13
there can be two specimen terms
AndreaGuarracino
2020-11-13
Initial commit: SPARQL playground, which replaces the demo page. Some queries...
lltommy
2020-11-13
Yaml and ShEx changes
lltommy
2020-11-13
fix in the ids to consider
AndreaGuarracino
2020-11-13
added ids-to-consider option to the NCBI script
AndreaGuarracino
2020-11-12
added closed shapes
AndreaGuarracino
2020-11-12
added missing _type: "@id" to the assembly_method field in the schema
AndreaGuarracino
2020-11-12
managed the assembly_method in the scripts, doc, and the example templates
AndreaGuarracino
2020-11-12
updated alignment_protocol field in the script, doc, and the example templates
AndreaGuarracino
2020-11-12
Trying to fix the submitter shape, shex and yaml
lltommy
2020-11-12
Proposed new technology shape/yaml structure
lltommy
2020-11-11
Support uploading new metadata only
Peter Amstutz
2020-11-11
Merge branch 'master' of https://github.com/arvados/bh20-seq-resource
lltommy
2020-11-11
Adding GPS coordinates and contitent membership for Memphis and Canada
lltommy
2020-11-11
Make collect-seqs skip bad inputs.
Peter Amstutz
2020-11-11
Documenting and QC of YAML. Some conflicts discovered that need review
lltommy
2020-11-11
Fix resolving permalinks such as http://covid19.genenetwork.org/resource/MT32...
Pjotr Prins
2020-11-11
Notes
Pjotr Prins
2020-11-11
Conflict in guix-deploy
Pjotr Prins
2020-11-11
Deploy
PubSeq webserver
2020-11-11
Deployment
Pjotr Prins
2020-11-11
Move files to correct folder
lltommy
2020-11-11
Merge branch 'master' of https://github.com/arvados/bh20-seq-resource
lltommy
2020-11-11
Adding covid death and covid cases per country as additional background infor...
lltommy
2020-11-11
create_sra_metadata script doesn't trick the quality control about missing da...
AndreaGuarracino
2020-11-11
Merge branch 'master' of https://github.com/arvados/bh20-seq-resource
lltommy
2020-11-11
restricting specimen_source to obo:NCIT which would have prevented the ncbi t...
lltommy
2020-11-10
Valid uploads with sequence_label in PubSeq replaces old one.
Peter Amstutz
2020-11-10
Merge pull request #116 from arvados/uuid-for-resource
Peter Amstutz
2020-11-10
Use arvados uuids for RDF subjects.
uuid-for-resource
Peter Amstutz
2020-11-10
Merge pull request #114 from BonfaceKilz/feature/add-twitter-feed
Pjotr Prins
2020-11-10
Demo links to permalink for countries
Pjotr Prins
2020-11-10
Delete unused endpoint
BonfaceKilz
2020-11-10
Fetch tweets from the correct redis queue
BonfaceKilz
2020-11-10
virtuoso: no-cache
Pjotr Prins
2020-11-10
virtuoso: header change
Pjotr Prins
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