index
:
bh20-seq-resource
analysis-refactor
fasta-subset-from-query
generate-cwl
master
new_assembly_method_field
pangenome_workflow_abpoa
upload-download-status
uuid-for-resource
yamlfa2ttl
Tool to upload SARS-CoV-2 sequences to BH20 Arvados instance and orchestrate analysis
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Author
2020-06-24
Merge pull request #85 from AndreaGuarracino/patch-18
LLTommy
2020-06-22
very little readme for the scripts
Andrea Guarracino
2020-06-22
added new script to prepare metadata of sra data
AndreaGuarracino
2020-06-22
moved the genbank script in his specific directory
AndreaGuarracino
2020-06-22
added new dictionary entries
AndreaGuarracino
2020-06-22
little fix for specimen_source
Andrea Guarracino
2020-06-22
Adjust QC filter and relabel output sequence with sample_id
Peter Amstutz
2020-06-22
Merge pull request #86 from AndreaGuarracino/patch-19
Peter Amstutz
2020-06-22
new entries for the EBI samples
AndreaGuarracino
2020-06-22
Better invalid sequence QC handling
Peter Amstutz
2020-06-22
corrected the wrong entities
Andrea Guarracino
2020-06-22
Handle upload & assembly of gzipped, paired-end fastq
Peter Amstutz
2020-06-18
removed double sorting
Andrea Guarracino
2020-06-18
Merge pull request #84 from BonfaceKilz/master
Pjotr Prins
2020-06-18
fix(map): update fasta count key
BonfaceKilz
2020-06-18
fix: show missing markers
BonfaceKilz
2020-06-17
Slighlty alter SPARQL query to truley sumarize locations for contients. Most ...
lltommy
2020-06-17
Merge pull request #83 from BonfaceKilz/feature/display-content-sequences
LLTommy
2020-06-17
Add cluster marker group
BonfaceKilz
2020-06-17
Move map logic to main.js
BonfaceKilz
2020-06-17
Move js script to bottom of page
BonfaceKilz
2020-06-17
Add styling to map
BonfaceKilz
2020-06-17
Fix broken HTML
BonfaceKilz
2020-06-17
Move leaflet CSS to the head section
BonfaceKilz
2020-06-17
Add section for map and add basic styling
BonfaceKilz
2020-06-17
Add leaflet css and js libs
BonfaceKilz
2020-06-17
Remove literal json representation of map
BonfaceKilz
2020-06-16
starting to include a map
lltommy
2020-06-15
Merge branch 'master' of https://github.com/arvados/bh20-seq-resource
lltommy
2020-06-15
Adding endpoints using grouping of continents
lltommy
2020-06-15
virtuoso: remove graph before update
Pjotr Prins
2020-06-14
Merge branch 'master' of https://github.com/arvados/bh20-seq-resource
lltommy
2020-06-14
Tried to make a start with the 'demo' part, table works, drilling down not
lltommy
2020-06-12
Merge pull request #82 from AndreaGuarracino/patch-17
LLTommy
2020-06-12
Adding endpoint getCountByGPS which could be used to draw a map
lltommy
2020-06-12
species dictionary
Andrea Guarracino
2020-06-12
species are managed in another dictionary, try-catch added to avoid unexpecte...
Andrea Guarracino
2020-06-12
Fix buttons, close #71
Pjotr Prins
2020-06-12
Added github repo to Download
Pjotr Prins
2020-06-12
Reinstated FASTA search (thanks @lltommy)
Pjotr Prins
2020-06-12
Removing external CSS dependency
Pjotr Prins
2020-06-12
Merge pull request #79 from mr-c/update_tools
Pjotr Prins
2020-06-11
tweaks for proper graph browser output
Michael R. Crusoe
2020-06-11
Fixing #65 and adding additional country information
lltommy
2020-06-08
Merge pull request #74 from AndreaGuarracino/patch-16
LLTommy
2020-06-07
the script is more verbose; added other countries
AndreaGuarracino
2020-06-06
fixed collection_location when it is not present in the dictionary terms
AndreaGuarracino
2020-06-06
fixed collection-date management using a parser
AndreaGuarracino
2020-06-06
fixed collection-date management; updated assembly info management for new IDs
AndreaGuarracino
2020-06-02
Merge pull request #75 from mr-c/update_tools_repo
Peter Amstutz
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