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-rw-r--r--workflows/pangenome-generate/collect-seqs.py2
1 files changed, 1 insertions, 1 deletions
diff --git a/workflows/pangenome-generate/collect-seqs.py b/workflows/pangenome-generate/collect-seqs.py
index af4a0dc..1a0807c 100644
--- a/workflows/pangenome-generate/collect-seqs.py
+++ b/workflows/pangenome-generate/collect-seqs.py
@@ -38,7 +38,7 @@ for item in validated:
pdh = item["portable_data_hash"]
with arvados.collection.CollectionReader(pdh, api_client=api, keep_client=keepclient) as col:
with col.open("sequence.fasta", "rt") as fa:
- subject = "http://collections.lugli.arvadosapi.com/c=%s/sequence.fasta" % pdh
+ subject = "http://covid19.genenetwork.org/resource/%s" % pdh
label = fa.readline().strip()
merged_metadata.write("<%s> <http://biohackathon.org/bh20-seq-schema/original_fasta_label> \"%s\" .\n" % (subject, label[1:].replace('"', '\\"')))
skip = (subject in blacklist or label[1:] in blacklist)