1 files changed, 32 insertions, 0 deletions
diff --git a/workflows/yamlfa2ttl/yamlfa2ttl.cwl b/workflows/yamlfa2ttl/yamlfa2ttl.cwl
new file mode 100644
index 0000000..143fc9d
--- /dev/null
+++ b/workflows/yamlfa2ttl/yamlfa2ttl.cwl
@@ -0,0 +1,32 @@
+#!/usr/bin/env cwl-runner
+
+cwlVersion: v1.1
+class: Workflow
+doc: "Workflow to go from YAML (metadata) + FASTA (sequence) to TTL (metadata)"
+
+inputs:
+  path_fasta:
+    type: string
+    doc: input fasta to validate
+
+  format_to_check:
+    type: string
+    default: text/fasta
+
+steps:
+  check_format:
+    in:
+      path_fasta: path_fasta
+      format_to_check: format_to_check
+    doc: the input has to be a valid FASTA format file
+    out: []
+    run: check_format.cwl
+
+  check_sequence:
+    in:
+      path_fasta: path_fasta
+    doc: the input sequence has to be enough similar to the reference
+    out: []
+    run: check_sequence.cwl
+
+outputs: []