diff options
Diffstat (limited to 'workflows/yamlfa2ttl/check_sequence.cwl')
| -rw-r--r-- | workflows/yamlfa2ttl/check_sequence.cwl | 20 |
1 files changed, 20 insertions, 0 deletions
diff --git a/workflows/yamlfa2ttl/check_sequence.cwl b/workflows/yamlfa2ttl/check_sequence.cwl new file mode 100644 index 0000000..946948d --- /dev/null +++ b/workflows/yamlfa2ttl/check_sequence.cwl @@ -0,0 +1,20 @@ +#!/usr/bin/env cwl-runner + +cwlVersion: v1.1 +class: CommandLineTool +baseCommand: python3 + +inputs: + script: + type: File + inputBinding: {position: 1} + default: {class: File, location: check_sequence.py} + path_fasta: + type: string + inputBinding: {position: 2} + path_sars_cov_2_reference_fasta: + type: File + inputBinding: {position: 3} + default: {class: File, location: ../../bh20sequploader/SARS-CoV-2-reference.fasta} + +outputs: [] |