diff options
Diffstat (limited to 'workflows/pangenome-generate/sort_fasta_by_quality_and_len.cwl')
| -rw-r--r-- | workflows/pangenome-generate/sort_fasta_by_quality_and_len.cwl | 18 |
1 files changed, 18 insertions, 0 deletions
diff --git a/workflows/pangenome-generate/sort_fasta_by_quality_and_len.cwl b/workflows/pangenome-generate/sort_fasta_by_quality_and_len.cwl new file mode 100644 index 0000000..59f027e --- /dev/null +++ b/workflows/pangenome-generate/sort_fasta_by_quality_and_len.cwl @@ -0,0 +1,18 @@ +cwlVersion: v1.1 +class: CommandLineTool +inputs: + readsFA: + type: File + inputBinding: {position: 2} + script: + type: File + inputBinding: {position: 1} + default: {class: File, location: sort_fasta_by_quality_and_len.py} +stdout: $(inputs.readsFA.nameroot).sorted_by_quality_and_len.fasta +outputs: + sortedReadsFA: + type: stdout +requirements: + InlineJavascriptRequirement: {} + ShellCommandRequirement: {} +baseCommand: [python] |