1 files changed, 19 insertions, 0 deletions
diff --git a/workflows/pangenome-generate/relabel-seqs.cwl b/workflows/pangenome-generate/relabel-seqs.cwl
new file mode 100644
index 0000000..b5b7231
--- /dev/null
+++ b/workflows/pangenome-generate/relabel-seqs.cwl
@@ -0,0 +1,19 @@
+cwlVersion: v1.1
+class: CommandLineTool
+inputs:
+  readsFA: File[]
+  subjects: string[]
+outputs:
+  relabeledSeqs:
+    type: stdout
+requirements:
+  InlineJavascriptRequirement: {}
+  InitialWorkDirRequirement:
+    listing:
+      - entry: {$include: relabel-seqs.py}
+        entryname: relabel-seqs.py
+hints:
+  DockerRequirement:
+    dockerPull: commonworkflowlanguage/cwltool_module
+stdout: relabeledSeqs.fasta
+baseCommand: [python, relabel-seqs.py]