diff options
Diffstat (limited to 'workflows/pangenome-generate/relabel-seqs.cwl')
| -rw-r--r-- | workflows/pangenome-generate/relabel-seqs.cwl | 10 |
1 files changed, 8 insertions, 2 deletions
diff --git a/workflows/pangenome-generate/relabel-seqs.cwl b/workflows/pangenome-generate/relabel-seqs.cwl index b5b7231..2b780d4 100644 --- a/workflows/pangenome-generate/relabel-seqs.cwl +++ b/workflows/pangenome-generate/relabel-seqs.cwl @@ -5,7 +5,13 @@ inputs: subjects: string[] outputs: relabeledSeqs: - type: stdout + type: File + outputBinding: + glob: relabeledSeqs.fasta + originalLabels: + type: File + outputBinding: + glob: originalLabels.ttl requirements: InlineJavascriptRequirement: {} InitialWorkDirRequirement: @@ -15,5 +21,5 @@ requirements: hints: DockerRequirement: dockerPull: commonworkflowlanguage/cwltool_module -stdout: relabeledSeqs.fasta +stdout: baseCommand: [python, relabel-seqs.py] |