diff options
Diffstat (limited to 'workflows/pangenome-generate/odgi_to_rdf.cwl')
| -rw-r--r-- | workflows/pangenome-generate/odgi_to_rdf.cwl | 25 |
1 files changed, 25 insertions, 0 deletions
diff --git a/workflows/pangenome-generate/odgi_to_rdf.cwl b/workflows/pangenome-generate/odgi_to_rdf.cwl new file mode 100644 index 0000000..079d6fb --- /dev/null +++ b/workflows/pangenome-generate/odgi_to_rdf.cwl @@ -0,0 +1,25 @@ +#!/usr/bin/env cwl-runner +class: CommandLineTool +cwlVersion: v1.1 +hints: + DockerRequirement: + dockerPull: spodgi/spodgi +requirements: + InlineJavascriptRequirement: {} + ShellCommandRequirement: {} +inputs: + - id: odgi + type: File + - id: output_name + type: string? + +stdout: $(inputs.output_name || inputs.odgi.nameroot+'.ttl.xz') + +arguments: + [odgi_to_rdf.py, $(inputs.odgi), "-", + {valueFrom: "|", shellQuote: false}, + xz, --stdout] + +outputs: + - id: rdf + type: stdout |