aboutsummaryrefslogtreecommitdiff
path: root/workflows/pangenome-generate/odgi_to_rdf.cwl
diff options
context:
space:
mode:
Diffstat (limited to 'workflows/pangenome-generate/odgi_to_rdf.cwl')
-rw-r--r--workflows/pangenome-generate/odgi_to_rdf.cwl9
1 files changed, 3 insertions, 6 deletions
diff --git a/workflows/pangenome-generate/odgi_to_rdf.cwl b/workflows/pangenome-generate/odgi_to_rdf.cwl
index 31ef0c5..96579a3 100644
--- a/workflows/pangenome-generate/odgi_to_rdf.cwl
+++ b/workflows/pangenome-generate/odgi_to_rdf.cwl
@@ -10,10 +10,8 @@ requirements:
ResourceRequirement:
ramMin: $((2 * 1024) + 1)
inputs:
- - id: odgi
- type: File
- - id: output_name
- type: string?
+ odgi: File
+ output_name: string?
stdout: $(inputs.output_name || inputs.odgi.nameroot+'.ttl.xz')
@@ -23,5 +21,4 @@ arguments:
xz, --stdout]
outputs:
- - id: rdf
- type: stdout
+ rdf: stdout