1 files changed, 3 insertions, 4 deletions
diff --git a/workflows/pangenome-generate/dups2metadata.py b/workflows/pangenome-generate/dups2metadata.py
index 9bda10a..89e7236 100644
--- a/workflows/pangenome-generate/dups2metadata.py
+++ b/workflows/pangenome-generate/dups2metadata.py
@@ -1,17 +1,16 @@
 import sys
+import re
 
 md = open(sys.argv[1], "rt")
 for d in md:
-    print(d)
+    sys.stdout.write(d)
 
 if len(sys.argv) < 3:
     exit(0)
 
 sameseqs = open(sys.argv[2], "rt")
 for d in sameseqs:
-    logging.warn(d)
     g = re.match(r"\d+\t(.*)", d)
-    logging.warn("%s", g.group(1))
     sp = g.group(1).split(",")
     for n in sp[1:]:
-        print("<%s> <http://biohackathon.org/bh20-seq-schema/has_duplicate_sequence> <%s> ." % (n.strip(), sp[0].strip()))
+        sys.stdout.write("<%s> <http://biohackathon.org/bh20-seq-schema/has_duplicate_sequence> <%s> .\n" % (n.strip(), sp[0].strip()))