diff options
Diffstat (limited to 'workflows/pangenome-generate/collect-seqs.cwl')
| -rw-r--r-- | workflows/pangenome-generate/collect-seqs.cwl | 3 |
1 files changed, 2 insertions, 1 deletions
diff --git a/workflows/pangenome-generate/collect-seqs.cwl b/workflows/pangenome-generate/collect-seqs.cwl index 635108f..268a08c 100644 --- a/workflows/pangenome-generate/collect-seqs.cwl +++ b/workflows/pangenome-generate/collect-seqs.cwl @@ -8,7 +8,7 @@ requirements: arv:RuntimeConstraints: outputDirType: keep_output_dir DockerRequirement: - dockerPull: arvados/jobs:2.0.3 + dockerImageId: arvados-and-samtools WorkReuse: enableReuse: false ResourceRequirement: @@ -36,6 +36,7 @@ outputs: type: File outputBinding: glob: relabeledSeqs.fasta + secondaryFiles: [.fai] mergedMetadata: type: File outputBinding: |